Paenibacillus sp. CAA11: DCC85_04085
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Entry
DCC85_04085 CDS
T10401
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pacl Paenibacillus sp. CAA11
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pacl03016
]
DCC85_04085
Enzymes [BR:
pacl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DCC85_04085
Transfer RNA biogenesis [BR:
pacl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DCC85_04085
Prokaryotic type
tRNA splicing ligases
DCC85_04085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Tox-SHH
Motif
Other DBs
NCBI-ProteinID:
AWB46803
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All DBs
Position
914216..915442
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AA seq
408 aa
AA seq
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MAYQNIEGVRVWGQPQEDALMQAKMCARTGNVIQALLMADHHKGYSQPIGGVVVYDGQIS
PSGVGYDIACGNKAVRTNLHVEDVKPGLAQLMDQISRHISFGVGRVNQIKVDHELFDDPD
WKVYEAIGRKEHDQLKTLARNQLGTVGSGNHFVDLFEEVGTGRVWVGNHFGSRGFGHKTA
SGFLNLAAGRDFLGKAPGESMDQPPVLLELSSELGEMYYRAMKLAGRYAYAGRDFVTREV
LSILGAESDFEVHNHHNFAWKETHGGKDVIVVRKGATPSAPGQLGFIGGSMGDISVIVRG
KDSAENRESYYSTVHGAGRIMSRTQAAGKMNWKTRSRSGGQISTRQMLDAVRDFGVELRG
AGTDESPFVYRKLQEVLEAHTETIEVLHVLKPIGVCMAGADEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtggcttatcaaaatatagagggtgtgcgtgtctggggacagcctcaagaggatgcgctt
atgcaggcgaagatgtgtgcccgcacgggaaacgtgatccaagcgctgctgatggcggac
catcataagggctacagccagccgattggcggggtggttgtctacgacgggcaaatctcg
ccctccggagttggatatgatatcgcctgcggcaataaggcggtgcggacgaatctgcat
gtggaggacgtcaagccgggcctggcgcagctgatggatcaaatctcgcgccacatctca
tttggtgtagggcgtgtcaatcaaattaaggtcgaccatgagctgttcgatgatccggat
tggaaagtgtacgaggctatcgggaggaaggagcacgaccagctgaagacgctggcccgt
aaccagctgggcactgtcggcagcgggaatcactttgttgacctgttcgaggaagtggga
accggccgggtgtgggtcgggaatcattttggaagccgcggctttggccataagacagcg
agcggcttcttgaatctggcggccggccgcgacttcctggggaaggcgcctggggagtcg
atggaccagccgcccgtactgcttgagctgagcagcgagcttggcgagatgtactaccgg
gccatgaaactggccggacgttatgcttatgccgggcgcgacttcgtcacccgtgaggtg
ctgtctattctgggcgctgagtcagacttcgaggtgcataatcaccataactttgcgtgg
aaagaaacgcatggaggcaaggacgtcatcgtggtgcggaagggagcgaccccgtcggca
cccggacagctcggctttattggcggcagcatgggcgatatctcggtgatcgtccgcggg
aaggattccgccgagaatcgcgaatcctactacagcaccgtgcacggcgctggccgcatc
atgagccggacccaggcggccggcaagatgaactggaagacccgctcgcgcagcggcggt
cagatctcgacccggcagatgctggatgccgtgcgagacttcggcgtcgagctccgcggt
gcgggtacggacgagagcccgttcgtctaccggaagctgcaggaggtgctggaggcgcat
acggagacgattgaggtactgcatgtgctgaagcctatcggggtatgtatggcaggagcc
gatgaattcgatccgtataaggactaa
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