Paenibacillus sp. CAA11: DCC85_07405
Help
Entry
DCC85_07405 CDS
T10401
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pacl Paenibacillus sp. CAA11
Pathway
pacl03030
DNA replication
pacl03430
Mismatch repair
pacl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCC85_07405
03430 Mismatch repair
DCC85_07405
03440 Homologous recombination
DCC85_07405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacl03032
]
DCC85_07405
03400 DNA repair and recombination proteins [BR:
pacl03400
]
DCC85_07405
Enzymes [BR:
pacl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DCC85_07405
DNA replication proteins [BR:
pacl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DCC85_07405
DNA repair and recombination proteins [BR:
pacl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DCC85_07405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AWB44058
LinkDB
All DBs
Position
1581385..1584942
Genome browser
AA seq
1185 aa
AA seq
DB search
MDNGFVHLHVHSEYSLLDGAARLEELVEQAASFGMKSLALTDHGVMYGAVPFYKLCKAKG
IKPIIGCEAYFTSGSRKERGSRKDQPIYHLILLAKNMTGYRNLMKLCSIGHLEGHHYKPR
IDWDALTRHKEGIIALSACLGGEVPQHLLHGRHEEAKRAALRYKEAFGEDFYLELQDHGL
QEQRKVNPLLIQLAQDIGIPLVATNDVHYLTRRDAEVQDVLICIGTGKTVEDEARLKIPT
DQLYFKQGEEMERLFPHVPEAIANTVRIAEKCSWELEFGRAILPAYEPIPTGHTAATYLA
ELCRRGLEERYQATERWEDAAAKQELEKRLEYELGVIDSMGFSDYFLIVWDFIAYAHQKG
IATGPGRGSSAGSLVAYVLHITDVDPMKYRLLFERFLNPERITMPDIDIDFSDERRDEVI
SYVVQKYGTEHVAQIITFGTMAARAAVRDVGRAMNVPFAEVDKVAKLIPGHLGITIDRAL
EQSPDLKTLYSGNPRVKGLLDMARKVEGMPRHASTHAAGVVISRSPLTDEVPLQEGSEKT
ALTQYTMENLESIGLLKMDFLGLRTLSIIERCMRWIQEQRGAAPNFKTVPDNDQATYDLL
SRGETTGVFQLESAGMRRVLRDLKPSEFEDIVSVLALYRPGPMEFIPKYIAGKHGQIEVE
YPHPDLEPILGDTYGIIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREVLDEQRGHF
VSGSLEQGYREEEANAVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVHFMASML
TAVMGSHRKVAEYIVECRRMNIQVLPPDVNASGVLFTPHADEGVIRFGLAAIKNVGTQAM
ESILKERKDKPFESLLDFCRRVDLRVCNKRVIESLIEGGAFDQLPGHRAQLLAMLDETVE
AALKWRKEREDLQIQLFDFVETPNWDIEYPEVPRFTASQQLEYERELLGLYLSGHPLDDY
DELLDGEGIDRLMELAEAPDESKTVVAGMVVSVKAITTKQGKAMAFMELEDQIERSEVVL
FPEVWNASRNMVEKGALIALRGTVQQQDEGFKLLADEVKPLSAAALQQLVQSARNSRHRG
SRPAASSRPASSTRVQQTSPSSAASGKKAAEQRVFIKITKEAENARLLETLKQLLEQHPG
PISTVLFYESTGKLLALSEKYKIKPSQALLRQMEDMLGPATVRVK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggataacgggttcgttcatttgcatgtgcacagcgaatacagtttgctggatggagca
gcccggttggaagagctggtagaacaggcggcaagcttcggcatgaagtcgctggcgtta
accgaccatggggtcatgtacggggctgttcccttttataagctgtgcaaggcgaagggg
atcaagccaattattgggtgtgaggcttattttacatcgggctcccgtaaggaaaggggg
agcaggaaagatcagccgatctatcatctgattctccttgcgaagaacatgacaggctac
cggaacctgatgaagctctgctccatcggacatctggagggccatcactataaaccgaga
atagactgggatgctcttacgcggcataaagaggggattattgccctaagtgcttgtctt
ggcggtgaagttccccagcatttgctgcacgggcgtcatgaggaggccaagcgggccgca
ctccgatataaggaggcgttcggggaggacttctatctggaattgcaggatcacggatta
caagaacagcgtaaggtgaatccgctgttgattcagctggcccaggatattgggataccg
ttggtggcaaccaatgatgtgcattatttaacgcgcagggatgccgaggttcaggatgtg
ctgatctgcatcggcaccggtaagaccgtagaagatgaagcccggcttaagattccgaca
gaccagctgtattttaagcagggggaagaaatggagcggctgtttccccatgtaccggag
gcgattgcgaatacggtaaggattgcggagaaatgcagctgggagctggaattcggacgg
gccatcctaccggcttacgagccgattccgacggggcataccgcagcaacctatttggct
gaactgtgccggagaggacttgaggagcgctatcaggctaccgaacgctgggaggatgcg
gcagccaagcaggagctggagaagaggctagaatatgaacttggcgtgattgacagcatg
ggcttctccgattatttcctgatcgtgtgggatttcatcgcttatgcccatcagaagggg
attgcaaccgggccggggcgcggatcgtctgccggcagccttgttgcttacgtccttcat
attacagatgtggatcctatgaaatataggctgttgttcgagcgtttcctcaacccggag
cggattaccatgccggatattgatattgactttagtgatgagcggcgtgacgaggttatc
agctatgtggttcagaaatatggaaccgagcatgtggcccagattatcactttcggcacc
atggccgctagagcggctgtccgtgacgtcggcagagcaatgaatgttccctttgcagag
gtggacaaggtcgccaagctgattcccgggcatcttggcatcacgattgaccgagcatta
gagcagagtcctgatctgaagacgctttatagcgggaatccgcgagtcaaggggctgctg
gacatggcccgcaaggtggaagggatgccaagacatgcctccacacatgctgcgggcgtc
gtcatttcgcggagcccgctaaccgatgaggtaccgcttcaggaaggcagcgagaagacg
gcgctgacgcaatatacgatggagaacctggaatccatagggctgctgaagatggatttt
ctcggtcttcgaactttatctattatcgaacgttgtatgcgctggattcaggagcagcgt
ggagctgctccgaatttcaaaactgtgcccgacaatgaccaggctacttatgatcttctg
tcacgtggggaaaccacgggcgtattccagctagaatctgcgggtatgcgccgggtgctg
cgcgatctgaagccatcggaatttgaagatatcgtatcggttcttgcgctttatcgaccg
ggtccgatggaatttattccgaagtatattgcaggcaagcacgggcagattgaggtggaa
tatcctcatccggatctggagcccatccttggggacacatacgggattattgtttaccaa
gagcaaatcatgcaaattgcttctaagatggcgggattctcgctgggtgaagccgacttg
ctgcgccgcgcagtatccaagaagaagcgggaggttcttgacgagcagcggggccatttt
gttagcggcagcttggagcaggggtaccgcgaagaggaggccaacgccgtctatgatatg
atcgttcgctttgcagactacggatttccccgtgcccacgcggcagcttatggcgtgctg
gcttttcagaccgcctatctcaaggcgcattatcctgtgcattttatggcatccatgctg
acagcggtgatgggcagccatcggaaggtcgccgagtacattgttgaatgccggagaatg
aacattcaagtgctgcctcctgatgtgaatgccagtggtgtgctgttcactcctcatgcg
gatgaaggcgtgattcgctttgggcttgcggcgatcaaaaacgtaggaacacaggcgatg
gagagcattttgaaggaacgaaaggataaaccgtttgagagcctgcttgatttctgccgc
cgggtcgacttgcgggtctgcaacaagcgggtgattgagtcgctgattgaaggcggcgct
ttcgaccagctgcccgggcaccgggcacagctgcttgcgatgctggatgagacggtggag
gcggcgctaaaatggcgcaaagaacgagaggatctgcagatccagctgttcgatttcgta
gagacgcctaactgggatattgaatacccggaggttccgcggtttacagcatctcagcag
ctggaatatgagcgcgagctgctagggctgtatctttccggacatccgctggatgattac
gatgagctgctggatggcgaggggatcgaccggctaatggagctggccgaagctcccgat
gagagcaagaccgttgtcgcgggaatggttgtgtccgtgaaggcgattacgaccaagcaa
ggaaaggcgatggccttcatggagcttgaagatcagattgagcgaagcgaggtcgtactg
ttcccggaagtatggaatgccagccgaaacatggtcgagaagggtgcgcttattgcgctc
cggggcacggttcaacagcaggatgaaggctttaagttgcttgccgacgaggtcaagccg
ttaagcgcggctgcgctgcagcagctggtccagagtgcgcgcaattctcgccatcgtggg
agccgtcctgcggcttcctcacggccagcctcctccacgcgagtgcagcagacctcacca
tcctccgcagcttctggtaaaaaggccgccgaacagcgggtctttatcaagattaccaag
gaggcggagaacgccaggctgcttgagacgctcaaacagctgctggaacagcatcctggc
ccgatctctacggtcctgttctatgaaagtacaggcaagctgctggcgttaagtgagaag
tataagatcaagccttcccaggctttattgcgccagatggaggacatgcttggtccagct
acggtccgagtcaaatag
DBGET
integrated database retrieval system
