Paenibacillus sp. CAA11: DCC85_09130
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Entry
DCC85_09130 CDS
T10401
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pacl Paenibacillus sp. CAA11
Pathway
pacl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC85_09130 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacl03019
]
DCC85_09130 (rny)
Messenger RNA biogenesis [BR:
pacl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCC85_09130 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
ATP-synt_B
KH_2
Motif
Other DBs
NCBI-ProteinID:
AWB44372
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Position
1926613..1928157
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AA seq
514 aa
AA seq
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MPVWLIIFLVAAVSLFFGFGIGYFIRKSLAEAKISSAEHAASQIMENAKKEAEALKKETV
LEAKDEIHRLRAEADKDIRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVAGKEKRI
EETQQQIDLIYKNQVTELERISNLTMEDARSIILNNVEQEVRHETAQMIKDIEQQAKEEA
DKKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRREVDERIREYGEQA
TFEVGVHALHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLAGLMAGELGEDVVLARRAGL
LHDIGKALDHDVEGSHVEIGVELAKKYKEHPVVINSIASHHGDVEATSVIAMLVGAADAL
SAARPGARRETLETYIRRLEKLEEISESFEGVEKSYAIQAGREVRVMVQPEKIDDAESFR
LARDITKMIESELDYPGHIKVTVIRETRAVEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttggctcattatttttctcgttgccgccgtgtcattattctttgggttcggg
atcggatattttatccgcaaatctcttgcagaagctaaaatttccagtgcagaacatgcg
gcctctcaaattatggagaacgccaagaaagaagctgaagcactgaagaaagaaacggtt
ctggaagctaaggatgagatccacagacttcgggccgaagctgataaagacattcgtgaa
cgtcggaatgaaatacaacggcaagaaagacgattgttgcaaaaggaagagtcgctggat
aaaaaattggaatcgctggaacgcaaagaagaacaagtggctggcaaagagaagcgtatt
gaagaaacccagcagcaaatcgatcttatttacaagaatcaagtcaccgagctcgagcga
atctccaatcttactatggaagatgcaagaagcattattttgaataatgtggagcaagag
gttcgccatgaaacggcacagatgattaaagatatcgaacagcaagctaaagaggaagcg
gataagaaatcccgtgaaatcattacgctggcgattcaacgctgtgcagccgatcatgtc
gctgagacaacagtatcggttgtgactctgcctaatgaggaaatgaaaggccggatcatc
ggacgtgaaggacggaatatccgggcgcttgagacgcttaccggtatcgatcttattatc
gatgatacgccggaggccgttattttgtcaggcttcgatccgatccgccgggagattgcc
cgcactgcgcttgagaagcttgtggccgatggccggattcacccagcccgcattgaggaa
atggtggagaaatcccgccgtgaggttgacgagcgtattcgtgaatacggtgaacaagct
acatttgaagtgggcgtacatgcgctccatccagatctaatcaagattttaggtcgtctg
aagttccggacaagctacggacagaatgtgcttaagcattccatggaagttgcctatttg
gctggtttgatggctggagagctgggcgaagatgttgttcttgcgagaagagccggactg
cttcatgatatcggtaaagcgctggatcatgatgtggaaggatctcacgttgaaatcggc
gtggagctggcaaagaaatacaaagagcatccagtggttatcaacagcattgcctctcac
catggcgatgtagaagctacttctgtcatcgctatgctagtaggtgcagctgacgctttg
tcggcagcaagacctggagcacgccgtgaaacgctggaaacttatattcgccgtcttgag
aagctggaggagatctctgaatccttcgagggtgtagagaaatcctatgctatacaagcg
ggccgcgaagttcgcgttatggtacagcctgagaagattgatgatgcggaaagcttccgc
ttggcacgtgatattacgaagatgattgaaagtgaactggattacccaggacacatcaag
gttaccgtaattcgtgagacaagagcggttgaatacgcaaagtag
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