Paenibacillus sp. CAA11: DCC85_20565
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Entry
DCC85_20565 CDS
T10401
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pacl Paenibacillus sp. CAA11
Pathway
pacl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCC85_20565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacl03019
]
DCC85_20565
03009 Ribosome biogenesis [BR:
pacl03009
]
DCC85_20565
Enzymes [BR:
pacl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCC85_20565
Messenger RNA biogenesis [BR:
pacl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCC85_20565
Ribosome biogenesis [BR:
pacl03009
]
Prokaryotic type
rRNA helicases
DCC85_20565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Rab11-FIP3
Motif
Other DBs
NCBI-ProteinID:
AWB46322
LinkDB
All DBs
Position
complement(4391204..4392640)
Genome browser
AA seq
478 aa
AA seq
DB search
MTTFQQFGILPALNDILRSQGIVKPTPVQEAALPELLAGGDVIAQAQTGTGKTLAFLLPI
FERINPAKPQPQALIITPTRELAIQVTAEARKLAAGRPGVNLLAAYGGQDVERQLRKLEG
GSHLVIGTPGRLLDHLRRGSLQLGGVTMLVLDEADQMLHMGFLNEVEQLINATPKRRQTM
LFSATMPDGIRRLARNYMKTPKDIRISSGSDIPLDNIRQLVIECTDRSKQDALQMMIERD
RPYLAVIFCRTKRRAKTLNEALQEAGYASDELHGDLSQSKREQVMRAFRDAKLQLLVATD
VAARGIDVEGVTHVYNYDIPHDAESYVHRIGRTGRAGGKGLAVTFVAPRDLPELRDIERG
ISQRIERQRYEASGLVKREGQPEGSGRKQGQGEGRAKQPNTAAGGRSGGRRGEGRNAGGR
RGEGRQDGSKQQGGRGNRGKGSEGQGGRGRRGESRGSSGGSGGSGRSGSRGGGGRRGR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcagcaattcggcatattgccagctttgaatgatattcttagaagtcag
gggattgttaaacctacgcctgtgcaggaagcggcgcttcctgagctgctagcgggcgga
gacgtcattgcccaggcccagacggggactggcaagacacttgccttccttttaccgata
ttcgaacgaattaatccagctaagccgcagccgcaggcactgattattacaccgacgcgt
gagcttgcgattcaggtgacggccgaggcgcgcaagctggctgccgggcggcctggggta
aatctgctggccgcttacggcggtcaggacgtggaacgccagctgcgcaagcttgaaggc
gggagccatctcgtgatcggcacgccggggcgcctgctcgatcatctgcgccgcggctcg
ctccagctgggcggcgtaacgatgcttgtgcttgacgaggccgatcagatgctgcatatg
ggctttctcaatgaagtcgagcagctgatcaatgctacgccaaagcgcaggcagacgatg
ctgttctctgccaccatgccggacggcatccggcgtctggcccggaactacatgaagacg
cctaaggacattcgaatttcttcaggctcggatattccgctggacaacatccgccagctt
gtcattgagtgcaccgaccgctccaagcaggatgcactccagatgatgattgaacgcgat
cgtccttatctggccgtcatcttctgccgcaccaagcgccgggcgaagacgctgaatgag
gctctgcaggaggcagggtatgcctcagacgagctgcacggcgatctgtcgcagtccaag
cgtgagcaggtgatgcgcgctttccgcgacgccaagcttcagctgctggtagccacggat
gtagcggcgcgggggatcgacgtagagggcgtgacacatgtctacaactacgatattcct
catgatgcggagagctatgtgcatcggatcggccggacgggccgggctgggggcaaaggg
ctcgctgtaacctttgtggcgccgagagacctgccggagctgcgggacattgagcgcggt
atttctcagcgtattgaaagacagcgctatgaagcctccggcttggtgaagcgtgaaggc
cagccggaaggaagcgggcgtaagcagggtcagggtgaagggcgtgccaagcagccgaac
actgccgcaggcgggcgcagcggaggccgccgcggcgagggccgcaatgcaggaggccgc
cggggagaaggccgtcaagacggctccaagcagcaaggcggccgcggtaatcgaggcaaa
ggcagcgagggtcaaggcggccggggccgtcgcggtgagagccgagggagcagcggaggc
agtggaggcagcggcagaagcgggtctcgaggaggcggaggccgccgggggcgttaa
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