Paenibacillus sp. CAA11: DCC85_22235
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Entry
DCC85_22235 CDS
T10401
Name
(GenBank) LPS biosynthesis protein
Organism
pacl Paenibacillus sp. CAA11
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Gene cluster
GFIT
Motif
Pfam:
DUF7601
CarboxypepD_reg
DUF5979
CarbopepD_reg_2
SpaA
Motif
Other DBs
NCBI-ProteinID:
AWB47104
UniProt:
A0A2S0UH17
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Position
complement(4777731..4783754)
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AA seq
2007 aa
AA seq
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MLSFCLAVLLALQTVVFPAAANANGVPGSPNAVDSLSVTQAVYGAPGQPSSATQAVYARP
STLAALATNPVDKTTVLVSANPAFNLTVKQGNPAAVIQPGGEINGRENFTLELESIAVPT
KGDDLNAPPEGVIQQGDYAILDKAVYFPGLNLAPAGPMSINQGGLKIATVQFFADSIKIT
FDGTGVYDGSRRDVKIGFSAAAKAADQTPGGGGDTTIFGDGYKFKNSDLVPEYNIIVSSL
SNGGYDTGINSPSFQEGTITWKAVVTATDRDDKTVPLKLDGLTFSDALANVGVYVPGSFT
VDGSAADPDVAADRTLSYKFPAVSTVDNVRSTATITFKTWIPSNIYYYEKNGNFADQYGW
ARIDNAANLVDDAADVKASSNTHRIAIRPNWIAVTGKPGKSGNDTLITWTVEVNKRINNN
GVLSRTGLQNVKITDILPAGTEFVSATYKNGDSGTDTPITRNAAGEYEIGTAIGGDLNGP
LYMTVVTKVTDSSKSTFDYKARANWELDVKDGGTAIQNNDATEWTAPAAVMENAQVRIGA
HAFTKSATTTTALHNIAGTKWTINLKLQYDLDAPVVYDLLVYGGSLDVLDNLDANPKVTS
TTLDAIKSQIDTKQLWQKYRENTLTVSNGLTGEVIPLTVNGERVADLIKVTGYKGDVSGS
VSFEAVTTNPDNLFRQDNVGNTWSNRGLLFDGDDYMSRAEANTSNFVRMLNKEMLYANTA
GLEGVAADWNRNYSGQWSDSIWKRTPVANDPNWYTDNSRPDNYILAGYDRKDQTVTFRLA
VNMPGFNTEEMAKDGGTRVASDIKLVDTLPEGWEFVDYAPGEAYRLYKGSTGYRTDGKGG
NGRYAQAVSVIDPGTPQHVVSFTQNGNKGTFTFSKLESPYVILVKARPTHAALATYQLGN
NNAGENQAVFSMKWGDKPYSATEVHKIIVPVQSLSKTVQKPVSGVQEWTVNYTPPFQMKK
GVYLLDTLGKGLKLRQNAAGGLSLDPSDIAVYPGKLKPDGTLEREGGPLNLADPNSEVKV
TAGTDPATGGSTLRFDFADPNKLYQLVYQTESQGMQPGTAGNSIKLMGDNTLPPIGAQSS
ITLDANDVAGSANENGLLYLKKVGPDGTTVLKDVKFKLFNSDGTPAKDKDGNVMEEKTTG
VDGKTNFIIQLAGDYLLKQTYIDTNTYLPTTTVYRVRVIDSPGKPVLVDGIKVDSNTPLI
VPTPAQGKLTISNKVEGNGSDPNKEFEYAVTFSGEGKDGEYTYKKPDHTDGKIKSGDKII
LKHGQTATLPILPAGLVYTVTEGDYTTVDGYTTDPGTREWSGTIVNKGDHKADFINERIV
SKLTISNAVMGNGGDKSKEFEYTVRFEGTGKDESYAYEKSDGDKGLIKSGGIFRLKDGET
LDILDLPNNLKYTVTQKDYTTDEYMTTPVERYYTGVMKGKDETAPFTNVRVLTGSLLIGN
TVQGNGGDKTKAFKYKVTFTGEGADGSYPYEKSDGSKGTITSGDTFELRDGQTFLVQELP
TNLQYKVTEDNYTNDGYETDPESLNRTGTIPAKDAAEARFVNKRQLPVLEGVLRDNNTGE
VIPNASITVTNLKTGEKQTIRTNEKGEYSVIAEADTDYTITFTKRYQVGGKDVPVEFTQK
ANVNSSVTNETVPANITAVGIVLLKQPDGQDSLLGSELAGKMRIYLRNAGGQYVTDENGK
PKAFSLQPNGVFSAEGLAAEKYKMEVRYEVAPGQELTVLHADLDVKANGELNISQGLVDP
YGIITDATNGRTIEGAEVTLYYADTPRNKANGIVPGTKVTLPAIPGFAPNDNASPSQNSD
ANGAYAYMVFPYTDYYLVVTKAGYETYTSPILSVDTDVVRHDLQLKPISSGGGGGGTVPV
DPGPAPVTPVPEPSKPEPESPKPGSVNGGTDNTDNGTDQVANGSDNIDNGTDNVDNGIGS
IDNGTDDVNNGAGDIDNGMDDADSDNSKGNNAGGNVDNEAASVDYELDDAPKTGDSSPSP
TLYMVLALMSLITIGFCLHSSKKKHIQ
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atgctatctttctgcctggcagttttgcttgccttgcagacagtagtgttccctgctgct
gcaaatgcgaatggcgtaccgggctcgccgaacgcggtcgattcgctgtcggtaactcag
gcggtgtacggcgcgccaggccaaccgtcatcggcaactcaggcggtgtacgctcggccg
tcgacattagcggcgctggcgacaaacccggtggacaaaacgacggtgctggtcagtgcc
aatccggcgtttaacctcacagtgaagcagggcaaccctgcggctgtgattcagcctggg
ggcgagattaacggccgggagaactttacccttgagctggaaagtatcgccgtgccgacc
aagggggacgatctcaatgctccgcctgaaggcgtgattcagcagggggattatgccatc
ctggacaaggcggtctacttccctggtttgaatttggcgcctgcaggtcctatgtcaatc
aatcagggcggactgaagattgcgaccgtccagttttttgccgattccatcaaaattaca
tttgatggcacaggggtatatgacggcagtagacgcgacgtcaaaattggcttttccgct
gctgctaaagccgcagatcaaacccctggcggcggtggggatacgaccatttttggagat
ggctataagtttaaaaactcggacttagtgccggagtacaacatcattgttagctcttta
agcaacggcggctatgacactgggattaacagcccctcttttcaagagggtaccattacg
tggaaagcggtagtgactgcgacggatagggacgataaaaccgttcccctgaagttggac
gggctgaccttctcggatgcgcttgcgaacgtaggcgtgtatgtgcctgggtctttcacg
gtggatggaagtgcggcagatcctgatgttgctgcagatcgcacactttcctacaagttc
ccagccgtatccacggtagataatgtcaggagcacggcgacgatcactttcaaaacgtgg
atccctagcaatatttattactatgaaaagaacggcaattttgctgatcagtatggatgg
gcccgcattgataatgctgcaaaccttgtagatgacgctgccgatgtgaaagcttcatcc
aatacccatcggattgccatacgacccaactggattgcagtgacgggcaagcccggcaag
agcggaaacgatacgctcatcacatggacagttgaggtcaacaagaggattaacaataat
ggcgtgctgtccagaaccggcttgcagaatgttaagatcacagacatcctgcctgcgggg
acggagtttgtgtctgcaacttataagaatggggacagcggtacggataccccaattacc
cgaaacgctgcaggggagtacgagatcggaaccgccatcggcggggatctgaacggccct
ctctatatgacagttgtgactaaggtgacagacagcagcaagtcaacctttgattacaaa
gcgcgcgctaactgggagttggatgtcaaggatggaggaactgccatccaaaacaacgat
gcgaccgaatggaccgctcccgctgccgttatggaaaatgcacaggttagaattggcgca
catgccttcacgaaaagtgccactacaaccaccgcgctgcacaacattgcaggcaccaag
tggacgatcaacttgaagctgcaatacgatctggatgctccggtcgtctatgatttgcta
gtttacggcggttctctcgacgtactggataatctggacgccaatcctaaggtaacgtcg
acaactctggatgctattaagagtcaaatcgacaccaagcagttgtggcagaagtaccgc
gagaatacgctgaccgtgagtaatgggttaacgggtgaagtgatccccttgacggtcaac
ggcgagcgggtggcggacctgatcaaagtgaccgggtacaaaggagatgtatcggggagc
gtttcttttgaggccgtcacaaccaacccggataacctgttccgacaggataatgtcgga
aacacatggagcaaccgggggctgctcttcgatggggacgattatatgagccgcgcagag
gccaacacctcgaattttgtgcggatgctgaacaaggaaatgctgtatgcgaacacggcg
ggtttagaaggggttgcagccgactggaaccgcaactattcaggccaatggagtgacagc
atatggaaaagaacgcccgttgccaacgatccaaactggtatacggacaactctcgtcct
gacaattacatcctggcaggctatgaccgcaaggatcaaacggtcaccttccggctggcg
gtgaacatgccaggcttcaatacggaggagatggccaaggatggcggcacccgtgttgcc
agcgacatcaagctggtggatacgttgccggagggctgggagtttgtagattatgctcct
ggcgaggcttatagactttataaaggtagtacgggctatagaacggatggtaaaggcgga
aatggtaggtacgctcaggccgtttctgttattgatccgggtacgcctcagcatgtagtg
agcttcacccagaatggcaataagggcaccttcactttctccaagctggagagtccttac
gtcattctggtgaaggcgcgtccgacccatgccgcgcttgcgacctaccagttgggtaac
aataatgccggtgagaatcaggctgtgttctccatgaaatggggagacaagccgtacagc
gcgaccgaagtccacaaaattattgtgcctgtgcagtctctgagcaagacagtacaaaag
cctgtttcaggggtacaggaatggacggtgaattacacgcctccgttccagatgaagaaa
ggtgtctatttgctggatacccttggcaagggactgaagctgcgccagaatgcagcaggt
ggcctatctctcgatccttccgacatcgctgtctatcctggcaagttaaagccggatggc
actttggagcgtgaaggaggtccgctaaatcttgcggatccgaatagtgaagtgaaggtc
actgcaggcacagacccagcaacagggggatcgacgcttaggtttgactttgccgatccg
aataagctctatcagctcgtttaccagaccgaatcccagggcatgcagccgggaacggct
gggaactccatcaagctgatgggcgataatacccttccgccaatcggagcgcagagcagc
attacgctggacgcgaacgatgtggcgggaagtgcaaatgaaaacggcctgctctatctc
aagaaggttgggcccgacggcacaacagtgttgaaggacgtaaagttcaagttgtttaat
tctgacggtacaccggccaaggataaagatggaaatgtaatggaggaaaaaacaacaggt
gtagacggtaagacgaatttcattattcagctggctggggattatttgctcaagcagacg
tatattgataccaacacttacttgcctacgactacagtataccgggtgcgtgtcattgat
tcgccgggcaagcctgtccttgtagacggtataaaggtggattcaaacactccgctgatt
gtgcctacaccggcccaaggcaagctgaccatcagcaataaggtggaaggtaacgggagc
gatccgaacaaagagttcgagtacgccgtgaccttcagcggcgagggcaaggatggagag
tacacttacaagaagccagatcatacggatggcaaaattaagagcggggacaagattatc
ctcaagcacggacaaactgccacgctgccgatattgcctgcgggtctggtttataccgta
accgaaggcgattatacgaccgttgatggttacacgactgatccgggaacgagagaatgg
tccggcaccattgtgaataaaggcgatcacaaggcggacttcatcaacgaacggatcgtc
agcaagctgaccatcagcaatgcggttatgggcaacggcggcgacaagtcgaaggagttc
gagtacaccgtccgctttgagggtacaggtaaggacgaaagctacgcttacgagaagtcg
gacggggataaaggtctgatcaagtctggcggtatcttccggctcaaggacggggagaca
ctggatattttggacctgcctaacaatctaaaatatacagttacccagaaagactacaca
accgatgaatacatgactactcctgtggagcggtattataccggagtcatgaagggtaag
gatgaaactgccccgttcacgaacgtacgcgtcttgacaggcagcctgttaatcggcaac
acggttcaagggaatggcggcgacaagacgaaggcgttcaagtacaaggtcacctttaca
ggtgagggagcggatggttcctatccttatgagaagtcggatggcagcaaaggcaccatc
acaagtggagatacctttgagcttagagacggccagacgttccttgtacaagaacttcct
acgaatctgcagtataaggtaaccgaggataattatacgaacgacggctatgagacggat
cctgaaagtctcaatcgcacgggtaccattccggcgaaagatgcggctgaagcccgcttt
gtcaataaaaggcagcttccggttctggaaggcgtgctgcgggacaacaacacaggtgaa
gtcattccgaatgcgtccatcacggtgaccaatctgaagacaggcgagaagcagacgatt
cggacgaatgagaagggtgaatattcggtcattgccgaggccgataccgactatacgatc
acatttacgaagagatatcaggtaggcgggaaagatgtgcctgtcgagttcacgcaaaaa
gcgaatgtgaacagcagtgtgacgaacgagaccgttccggcgaatattacagccgtaggc
attgtgcttctgaagcagcctgacgggcaggattcgctgctcggcagcgagctggctggc
aagatgcgcatttacctgcggaatgccggaggtcaatatgtgacggatgagaacggcaag
cctaaagcgttcagcctgcagccgaacggtgtcttctcagcggagggtttagctgcggag
aagtacaagatggaagtgcgctacgaagtggcgccaggccaagaattaacggtccttcat
gcggatctggatgtgaaggcgaatggggaattgaatatttcccaagggctcgttgacccg
tatggtatcattacggatgcaacaaacggcaggacgattgaaggtgcagaagtgacgctg
tactatgcggatacgccgagaaacaaggccaacggcattgtaccaggtacgaaagtaacg
ctgccagcgattccgggctttgcaccaaacgataacgccagcccaagtcagaacagcgac
gctaatggtgcctatgcatacatggtgttcccgtatacggattactatctagttgtaacg
aaagctggctatgagacgtatacgagtccgatactctcggtcgatacagatgtcgtacgc
cacgatttacagttgaagccgataagttccggcggcggcggtggaggtacggttcccgta
gatcctgggccagctccggtgaccccggtgcctgagccaagcaaaccggaacctgaaagt
cctaagcccggcagtgtcaacggcggaaccgataacaccgataatggaaccgaccaagtc
gccaatggcagcgataacattgacaatggaaccgacaacgttgataacggaatcggcagc
atcgacaatggaaccgatgacgttaacaacggagctggtgacattgacaacggaatggat
gacgccgacagcgataacagcaaaggcaacaatgcaggcggcaacgtcgacaatgaagcc
gcgagtgtcgattacgagctggatgatgctccgaaaacaggggatagcagtccgtcgcca
accctctatatggtattggcgctgatgtccttgattacaattggattctgtctacacagc
agcaagaagaagcacattcagtaa
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