Cutibacterium acnes hdn-1: TIA1EST1_01235
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Entry
TIA1EST1_01235 CDS
T03470
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pacn
Cutibacterium acnes hdn-1
Brite
KEGG Orthology (KO) [BR:
pacn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacn03032
]
TIA1EST1_01235
03400 DNA repair and recombination proteins [BR:
pacn03400
]
TIA1EST1_01235
Enzymes [BR:
pacn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TIA1EST1_01235
DNA replication proteins [BR:
pacn03032
]
Prokaryotic type
DNA Topoisomerases
TIA1EST1_01235
DNA repair and recombination proteins [BR:
pacn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TIA1EST1_01235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AID35216
LinkDB
All DBs
Position
292159..294948
Genome browser
AA seq
929 aa
AA seq
DB search
MSPTKSLVIVESPHKATMIAGYLGPKYTVRASQGHVRDLPTSASEVPAKYKGEPWARTGV
NVDNEFTPVYVVSPEKRSTIRELKSLLKDSDELLLATDGDREGEAIAWHLLDELKPKVPV
RRMVFNEITEKAINEAVAHTRKLDTDLVDAQETRRILDRLYGYEVSPVLWKKVLPRLSAG
RVQSVATRLVVDRERERMAFTSANYWDMEATLTADLDEFQARLVSLDDTKIATGRDFDSH
GNLISSVRRLDEVAATAIAKALEKAPFTVTKVESKPYTRRPYAPFRTTTLQQEAGRKLGF
TSQRTMSVAQNLYEGGYITYMRTDSVALSQEAIHAARNQAAELYGSDHIPDKPRIYASKV
KNAQEAHEAIRPAGEHFRTPAETGLTGDEFRLYELVWMRTLASQMADAKGETLSVTIDAT
PVSPVNLPDGDVTTATFTASGRTITFHGFLRAYVESVDEGASDDAQKRLPQLSKGQDLDP
REVTAKGHDTRPPARYTEPSLVAKLEELEIGRPSTYASIIRTITSRDYVFKKGSALVPTW
LAFAVTRLLEEHFSNLVDYQFTADMEETLDQIARGNADRVAVLSAFYFGQTKTGDGDVPT
PTEGHEGLHQLVTELGDIDARTICTFPLDDSDVVVRVGRYGTYVEDPEGNRANVDDALPP
DELTVEAAKELLVSPNGQDRELGLDPHSHRPIVARNGRFGPYVTEVLDDDEATEIVETTT
KDGKKRRTKRKVKPRTASLFRSMSLETVTLDEALKLLSLPRVVGTAADGTEITAQNGRYG
PYLKKGTDSRSLGSEDEIFSITLEQAEAIYAQPKQRGRAAAKPPLRELGEDPASGRPIVV
NDGRFGPYVTDGQTNATLRKDDSVEDITPERAQELLAEKRAKGPAKKSPTKKKTTRKTTT
RTTTTKKTTKATSKSVKVTKANAKTSSGS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccgaccaagagcctcgtcatcgtcgagtccccccataaggccacgatgatcgcc
gggtacctggggcccaagtacaccgtgcgagccagtcagggtcacgtgcgcgacctgccc
accagcgcatccgaggttcccgccaagtacaaaggggagccatgggcgcgtaccggagtc
aacgtcgataacgagttcaccccggtctacgtcgtttccccagaaaagcggtcgacgatc
cgcgaactcaagagcctgctcaaggactctgacgagctcctgctcgctaccgatggtgac
cgcgagggggaggccatcgcctggcatttgcttgacgagctcaagccgaaggtgccggtg
cgtcgcatggtgttcaacgagatcaccgagaaggccatcaacgaggccgtcgcccatacc
cgaaagcttgatacagacctcgtcgacgcccaagagacccgacgcatccttgaccgtctc
tacggttacgaggtctccccggtgttgtggaagaaggtactgccgcggctgtcggcaggt
cgcgtgcagtcagtagctacccgactagtcgtcgaccgtgagcgcgagcggatggcgttc
accagcgcgaactactgggacatggaagccaccttaaccgccgacctggatgagtttcag
gcccgcttggtttccctcgatgacaccaagatcgccaccggccgcgacttcgactcccac
ggcaacctcatttccagcgtgcgccgccttgacgaagttgccgcgaccgctatcgcgaag
gcccttgaaaaggctccgttcaccgtcaccaaggtggagtccaagccgtacacccgccgc
ccttacgcccccttccgtaccacgaccttgcagcaggaagcaggtcgcaagctcggcttc
acctcccagcgcaccatgtcggtcgcccaaaatctctacgaaggcggctacatcacctac
atgcgtaccgactcggtggccctgtctcaggaggccattcacgcggctcgcaaccaggct
gccgagctctatggttccgaccacattccggacaagccgcgcatctacgcctctaaggtg
aaaaacgctcaggaagcccatgaggccatccggcctgctggcgaacacttccgcacccca
gctgaaactggcctgaccggggacgagtttaggctttacgagctggtctggatgcgtacc
ctggcctctcaaatggccgacgccaagggcgaaaccctttcggtgactattgacgctacc
ccggtctcgccggtaaacctgcccgacggcgatgtcaccaccgctaccttcaccgcgtct
gggcgcaccatcactttccatggcttcctgcgcgcttacgtcgagtccgtcgacgaagga
gcttccgatgacgcgcagaaacgtctgcctcagttgtcgaagggacaggatctagaccca
cgcgaggtgaccgctaaggggcacgacacccgcccgccggcccgctacaccgagcccagc
ctggtggcaaagctcgaggaactagagatcggtcgcccatcgacgtacgcatcaatcatc
cgcactatcaccagccgtgactacgttttcaagaagggctcggccctggtgccgacctgg
ctagcgttcgccgtcactaggctgttggaggaacacttttccaacctcgtcgattaccag
ttcaccgccgacatggaggagaccctcgaccagatcgcccgtggtaatgccgatcgggtg
gcggtgctctcagccttctactttggccagaccaagactggcgacggcgacgtcccgacg
cccaccgagggccatgaggggctgcatcagcttgtcactgagcttggtgacatcgacgca
cgcacgatctgcaccttcccgctcgacgactctgacgtcgttgtccgggtgggccgctac
ggcacctacgttgaggatccggagggcaatcgagctaatgtcgacgacgctctgcctcct
gacgagctcaccgtcgaggccgccaaggagctgctggtaagcccgaacggtcaggaccgc
gagctcggtctggatccgcacagccatcgtccgattgtggcccgcaacgggcgtttcggc
ccttatgtcaccgaggtccttgacgatgacgaggccactgagatcgttgagacgacaacc
aaggatggcaagaagcgtcgcaccaagcgcaaggtgaagccgcgcactgccagcttgttc
agatcgatgagccttgagaccgtcacccttgacgaggctctcaagctgctttcactaccc
cgagtggtcggaacggccgccgacggcaccgagatcactgcgcagaacgggcgctacggc
ccctatctcaagaagggaacggactcgcgttccttaggcagcgaggacgagatcttctcc
atcactttggagcaggccgaggctatttacgcccagcctaagcagcgcggtcgtgctgcg
gctaaaccgccgttgcgcgagcttggcgaggatccggcctcgggacgcccgatcgtcgtc
aatgatggccgtttcggcccttacgttactgacggccagaccaacgcgaccctccgcaag
gacgattcggtcgaggacatcaccccggagcgggcccaggaattgctggccgagaagcgg
gctaaagggccagccaagaagagcccaactaagaagaagacgaccaggaagacaaccact
cgcacaaccaccacgaagaagacgaccaaggccacctcgaagtccgtcaaggtgaccaag
gcgaacgcgaaaacgtcgtcaggaagctga
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