Cutibacterium acnes hdn-1: TIA1EST1_05220
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Entry
TIA1EST1_05220 CDS
T03470
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pacn
Cutibacterium acnes hdn-1
Brite
KEGG Orthology (KO) [BR:
pacn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pacn03016
]
TIA1EST1_05220
Enzymes [BR:
pacn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
TIA1EST1_05220
Transfer RNA biogenesis [BR:
pacn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TIA1EST1_05220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AID35835
LinkDB
All DBs
Position
complement(1134337..1135575)
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AA seq
412 aa
AA seq
DB search
MSDLPILAEPREGVPPVVNTPDSLTHTCRALSNGHGPIAIDTERAHGFRYSPRACLIQLR
RDGSGTHLVDPLALGGAVGLKPLAKALAGTQWILHAATQDMPCLAMDGLRPDDLFDTELA
GRLLNLPRVSLGPMVERYCGVTLLKEHSASDWSRRPLPRDWQVYAALDVELLNDLREKIL
SDLHEAGKEEWARQEFAHLVEVAADLPSEEPGIDPKRWRKLSHIGDIHSRAGLQLAHDLW
LARENLAHDLDIMPGRLLRDEALVAAARHCDRTGNVDVETVLAIRGFHRGRAKKYRQTWA
EAINHARSVSPTKYPPLREPSSGIPHPRSWERHHPEEAARWAAVRPAVNDVAADHDVPPE
NLCTPTWLRHFAWQPPEDCSVEGVDVFLEGLGARPWQREILSGPLSAVMATL
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacctccctatccttgctgaacctcgcgagggagtgccgccggtcgtcaacact
cccgacagtctcacgcacacctgtcgggccctcagtaacgggcatggtccgattgcgatc
gacactgaacgagcccacgggtttcgctatagcccccgggcttgcctcatccagctacgc
cgagacggatcgggcacacacctcgtcgatcccctcgctctcggtggagccgtcggcctc
aagcctctcgccaaggcgctggctggaacccagtggattcttcacgccgccacgcaggac
atgccctgccttgccatggacggcctgcgtcctgatgacctcttcgacactgaactggca
ggtcgtcttctcaacctgccgagggtcagcctgggcccgatggtcgagcgttactgcgga
gtgaccctacttaaggagcactccgcctctgattggtcgcgtcgacccctcccccgcgat
tggcaggtgtacgcggcccttgacgtcgaactcctcaacgacctcagggaaaagatcctt
agcgatcttcatgaagctggaaaagaagaatgggctcgtcaggaatttgcccatcttgtc
gaggtagcagcggacttgccgagcgaggaaccaggaatcgatccgaagcgctggcgcaag
cttagccatatcggtgatattcacagtcgggctggactgcaattagcgcacgatctgtgg
ctagcacgagagaacctcgcccatgacctcgatattatgcccggacgtctgctccgtgac
gaagccttggtcgccgcggctcgtcactgcgaccgcactggcaacgttgacgtcgaaaca
gttcttgccatcaggggatttcatcgaggacgggcgaaaaagtaccgccaaacctgggcc
gaggccatcaaccacgcacgaagcgtgtcaccgacgaagtatccgccgttgcgggagcca
tcctcaggcatcccccacccccggtcgtgggagcgccatcatccggaggaagccgcacgg
tgggcagccgtaagaccagccgtcaacgacgtggccgccgaccatgacgtcccacccgaa
aacctctgcaccccaacatggctgaggcattttgcatggcaaccgcctgaggattgttca
gtcgagggggttgacgttttcctggaggggctcggcgcacggccgtggcaacgggagatt
ctctcggggccgctaagcgcggttatggccacgctgtga
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