Arcobacter acticola: AACT_0416
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Entry
AACT_0416 CDS
T06605
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paco
Arcobacter acticola
Pathway
paco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AACT_0416 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paco03019
]
AACT_0416 (rnr)
03016 Transfer RNA biogenesis [BR:
paco03016
]
AACT_0416 (rnr)
Enzymes [BR:
paco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AACT_0416 (rnr)
Messenger RNA biogenesis [BR:
paco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AACT_0416 (rnr)
Transfer RNA biogenesis [BR:
paco03016
]
Prokaryotic type
tRNA degradation factors
AACT_0416 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKE27626
UniProt:
A0A6M8EE93
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All DBs
Position
404967..406817
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AA seq
616 aa
AA seq
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MLKELFKKIQTDCKTYSKEELIQIENFLKEDIIVKNENNNYELNSKYKVAIVNVGKNLVI
LEDLLSEHKNIKIEFDDLNGAYNGDLVLAKRIFNPRSRVKAKIVRILDGKKNEVLVYIKD
KAFHTVKENIRLENKNALKYNEGDVLLVDNKSLDLIKNLGNIEDPNIDEFISLHLYQEIY
RLEKHLEVDAKMDDTKQRVDLRDLCFCTIDPNSAKDHDDAIYFDTKENILYVAIADVSYF
VKEGSELDLLAFKKSTSIYLPQKVLPMLPPVLSEDMCSLKEGQDRYSYVFKMYLDVQNQS
VKKSELFEAIIKSHKNFSYGRIDRVIEGHLDQYSKIEKEIFDYLIPFYEISKKFRAKRLL
KGYDFRTSENRLKLRNSKLESIEVETSTSSHQLVEECMLLANIEASKKVNTVGIYRIHEE
PAFKAISKLVDDVNILGVNAKLQSDVHETILHIQQKAKIAMLSAEIDELIIQSQTQAKYS
SKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRILKTKQTPKNIDDVCSHISLNERKVDQLV
WDFEDRIYARWAADNIGEDIKVKVVDTEKGRAVCYENMIGMKVVLENYKGQKLFSKMGVK
IKSADIVTKIIIATIK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaaagaactatttaaaaaaattcaaacagattgtaagacatactcaaaagaggag
ctaatacaaattgaaaattttttaaaagaagatattattgttaaaaatgagaataataac
tatgaattaaattcaaaatataaagttgcaattgtaaatgttggaaaaaatttagttatt
ttagaagatttattaagtgagcataaaaatattaaaattgaatttgatgatttaaatggt
gcttataatggtgatttagttttagcaaaaagaatttttaatccaagaagcagagtaaaa
gctaaaatagtaagaattcttgatggtaaaaagaatgaagtattagtttatataaaagat
aaagcatttcatactgtaaaagaaaatataagattagagaataaaaatgcattaaaatat
aatgaaggtgatgttttattagtagataataaatcacttgatttaattaaaaatctagga
aatatagaagatcctaatattgatgaatttatttctttacatttatatcaagaaatatat
agacttgaaaagcatctagaagtagatgcaaaaatggatgatacaaaacaaagagtagat
ttaagagatttatgcttttgtacaattgatccaaatagtgcaaaagatcatgatgatgca
atttattttgatacaaaagaaaatattttatatgtagcaattgcagatgtttcttatttt
gtaaaagaaggaagtgagcttgatttattagcatttaaaaaatcaacatctatttatcta
cctcaaaaagtacttccaatgttacctcctgttttaagtgaagatatgtgttctttaaaa
gaagggcaagatagatactcttatgtttttaaaatgtatttagatgtacaaaatcaaagt
gttaaaaaatcagaactttttgaagcaataataaaatcccacaaaaatttttcttatgga
agaatagatagggtaattgaaggacacttagatcagtattcaaaaattgaaaaagagata
tttgattatttgattcctttttatgaaataagcaaaaaatttagagcaaaaagattacta
aaaggttatgattttagaaccagtgaaaatagattaaaattaagaaactctaagcttgaa
tcaatagaagttgaaacatcaacatcctctcatcaattagttgaagagtgcatgttactc
gcaaatatagaagccagtaaaaaagttaatacagttggaatttatagaattcatgaagaa
cctgctttcaaagcaatttcaaaacttgttgatgatgtgaatattttaggagttaatgca
aaacttcaaagtgatgttcacgaaactattttgcatattcagcaaaaagctaaaatagct
atgttaagtgctgaaattgatgaacttataattcaatcacaaactcaagcaaaatattca
tcaaaaaatctaggacattttggtttaggattttcttcttattcacacttcacatctcca
attagaagatattcagatttggttttacatagaattctaaaaacaaaacaaactccaaaa
aatatagatgatgtttgttcacatatttcattaaatgaaagaaaagttgatcaactagtt
tgggattttgaagacagaatttatgcacgttgggcagcagataatataggtgaagatata
aaagtaaaagttgtagatactgaaaaaggaagagcagtttgttatgaaaatatgattgga
atgaaagtggttttagaaaattacaaagggcagaaattattttctaaaatgggagtaaaa
ataaaatcagccgatatagtaacaaaaattataatagcaacaattaaatag
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