Paraburkholderia acidiphila: FAZ97_07465
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Entry
FAZ97_07465 CDS
T07262
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pacp
Paraburkholderia acidiphila
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pacp03009
]
FAZ97_07465 (rlmD)
Enzymes [BR:
pacp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FAZ97_07465 (rlmD)
Ribosome biogenesis [BR:
pacp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FAZ97_07465 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Met_10
RrnaAD
Methyltransf_15
Cons_hypoth95
Methyltransf_23
TRAM
Methyltransf_11
MTS
PCMT
Methyltrans_SAM
N6_N4_Mtase
Methyltr_RsmB-F
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QGZ56115
UniProt:
A0A7Z2G6H8
LinkDB
All DBs
Position
1:complement(1676405..1677823)
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AA seq
472 aa
AA seq
DB search
MPFTPPKKRSKRERRAEKRAAVEASVAHAPILEIESLDMEARGVGRTVTETGEPGKVIFV
EGALPGERVTYSSYRKKPTFEQAQVVSVLRESAIRTKPQCAYFGICGGCSMQHLDVRAQI
AVKQRVLEDNLMHLSKVRSETMFRPIHGPSWGYRYRARLTVRNVPKKGGVLVGFHEKKSS
YVADMTSCEVLPPNVSAMLVPLRHLVAQLSICDRMPQIELAVGSSVTALVLRILEPLTAA
DEDLLRAFADEHNVQFWLQPKGPDTVFPFYPLDKELDYTLPEYGIRMPFKPTDFTQVNHQ
INRVLVGRALRLLAPEPGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDTLTARALENAR
ANGVDGHTSFACRNLFEVTADDMRALGHFDKFLVDPPREGAFAVAQALAEIAQSGNGPLP
KRIVYVSCSPATLARDAGVLVNEAGYRLKGAGVVNMFPHTSHVESIALFERD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcacgcccccgaaaaagcgcagcaagcgcgagcgccgcgccgaaaagcgcgcc
gccgtcgaagcctcggtcgctcatgcccccattctcgagatcgagtcgctcgacatggag
gcgcgcggcgttggccgcaccgtcaccgagacgggcgagcccggcaaggtgatcttcgtc
gagggcgcgctgccgggcgagcgcgtgacctactcgagctaccgcaagaagcctacgttc
gagcaggcgcaagtggtgagcgtgctgcgcgagagcgcgattcgcacgaagccgcagtgc
gcgtacttcggcatctgcggcggctgttcgatgcagcatctcgacgtgcgcgcgcagatc
gccgtcaagcagcgcgtgctcgaagacaacctcatgcacctctcgaaggtgcgctcggag
acgatgttccggccgattcacggcccgtcgtggggctaccgctatcgcgcgcgcctcacg
gtgcgcaacgtgccgaagaagggcggcgtgctggtcggcttccacgagaagaagagcagc
tatgtggccgacatgacgagctgcgaagtgctgccgccgaacgtttccgcgatgctcgtg
ccgctgcgccatctcgtggcccagctgtcgatctgcgatcgcatgccgcagatcgaactc
gctgtgggttcgagcgtgacagcgctcgtgctgcgcatactcgagccgctcacggccgcc
gacgaagatctgctgcgcgcgttcgccgacgagcacaacgtccagttctggctgcagccg
aagggcccggacaccgtgttcccgttctatccgctcgacaaggaactggactacacgctg
cccgagtacggcattcgcatgccgttcaagccgacggacttcacgcaggtcaatcaccag
atcaaccgcgtgctggtaggccgcgcgctgcgcctgctcgcgccggaaccgggcgaccgc
gtgctcgatctcttctgcggcatcggcaacttcacgctgccgctcgcgcgtctcgcgcgc
gaagtggtggggatcgaaggcagcgacacgctgacggcccgggcgctcgaaaatgcgcgc
gccaacggcgtggacgggcatacgtcgtttgcgtgccgcaacctgttcgaagttaccgcg
gacgacatgcgcgcgctcggccacttcgacaagtttctggtcgatccgccgcgcgaaggc
gcgttcgccgtcgcccaggcgctcgcggaaatcgcgcagagcggcaatggcccgctgccc
aagcgcatcgtctacgtgtcgtgcagccccgcgacgctggcgcgcgatgcgggcgtgctc
gtcaacgaggcgggttaccggctcaagggcgcgggcgtggtcaacatgttcccgcacacg
tcgcacgtggagtcgatcgcgctgttcgagcgcgattga
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