Paraburkholderia acidiphila: FAZ97_11775
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Entry
FAZ97_11775 CDS
T07262
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pacp
Paraburkholderia acidiphila
Pathway
pacp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ97_11775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacp03019
]
FAZ97_11775
Enzymes [BR:
pacp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ97_11775
Messenger RNA biogenesis [BR:
pacp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ97_11775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
AAA_22
P-loop_SecA
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QGZ55537
UniProt:
A0A7Z2J8C0
LinkDB
All DBs
Position
1:2600280..2601938
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AA seq
552 aa
AA seq
DB search
MSFDSLGLSEPLVRAVNELGYSTPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLTDMPPAANGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALKRGVDIVVATPGRLLDHMQQKTIDLSQLEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFADEIKALADSLLDSPALIEVARRNTTAETVAQKIYPVDRDRKRDLLTHLI
RQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKDGTLQVLV
ATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEHQLLKDI
EKLIKRAVPQEVIPGFEPDPNAKPEPIQRRSQPQGRAPRQGQGQGRGASNGANAANGGRP
AQARESRESREPRGGNREGGRDGNRESKREGGRENNRALAANGGGNNGQRPAKPASNGGG
VRTAKPVKQQGANHGAQGARGEHTRRESQRGVSHESALGRPQQRKSQGNPGALLGGRPGG
NSRRDGNGQRDR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctctcggcttgtccgaaccgctggtccgcgcagtcaacgaacttggg
tacagcacgcccacgccaatccaggcgcaagcgattcccgccgtgctcggcggcggcgac
ctgctcgccggcgcgcaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcttgacggacatgccgcctgcagcgaacggaaaacgcgtggtgcgcgcgctgatc
ctcacgcccacgcgcgaactggctgcgcaggtcgaagagagcgtgcgcgcctacggcaag
tatctgaagctcaagtccacggtgatgttcggcggcgtgggcatcaatccgcaaatcgac
gcgctcaagcgcggcgtggatatcgtggtcgcgacgcctgggcgcctgctcgatcacatg
cagcaaaagacgatcgatctttcgcagctcgagattctcgtgctcgacgaagccgaccgc
atgctcgacatgggtttcatccacgacatcaagcgcgtgctcgcgaagctgccgcccaag
cgccagaacctgctcttctcggccaccttcgccgacgagatcaaggcgctcgccgacagc
ctgctcgactcgcccgcgctcatcgaagtcgcgcgccgcaacaccacggccgaaaccgtg
gcgcagaagatttatcccgtcgaccgcgaccgcaagcgcgacctgctcacgcatctgatc
cgccagcacaactggtttcaggtgctcgtgttcacgcgcaccaagcacggcgcgaaccgc
cttgccgagcagctcacgaaggacggcatcagcgcactcgcgattcacggcaacaagagc
cagtcggcacgcacgcgcgctttgagcgagttcaaggacggcacgctgcaggtgctcgtc
gccacggacatcgccgcgcgcggcattgatatcgatcaacttccgcacgtcgtgaactac
gatctgccgaacgtgcccgaggactacgtgcaccgcatcggccgcaccgggcgcgcgggt
gcaacgggcgaagccgtgtcgctcgtgtgcgtggacgagcatcaactgctcaaggacatc
gaaaagctgatcaagcgtgccgtgccgcaagaggtcattccgggcttcgagccggacccg
aacgcgaagcccgagccgatccagcgccgcagccagccgcaaggccgtgcgccgcgccag
gggcaaggccagggccgcggcgcgtcgaatggcgcgaacgccgcgaacggcggacggcct
gcgcaggcgcgtgaatcgcgtgaatcgcgcgagccgcgcggcggcaatcgcgaaggtggc
cgtgacggtaatcgtgaaagcaagcgcgaaggcggccgtgaaaacaaccgtgcgcttgca
gccaacggcggcggcaacaacggccagcgaccggccaagccagcctcgaatggcggcggc
gtacgcaccgccaagcccgtgaaacagcaaggcgcgaatcacggtgcacaaggcgcgcgc
ggcgagcatacgcgtcgcgaaagccagcgcggcgtttcgcacgaaagcgccctcggccgc
ccgcaacaacgcaagtcgcaaggcaacccgggcgcactgctcggtggccgcccaggcggc
aattcgcgccgcgacggcaatggtcagcgcgatcgctga
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