Paraburkholderia acidiphila: FAZ97_12115
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Entry
FAZ97_12115 CDS
T07262
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pacp
Paraburkholderia acidiphila
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pacp03016
]
FAZ97_12115
Enzymes [BR:
pacp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAZ97_12115
Transfer RNA biogenesis [BR:
pacp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAZ97_12115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QGZ55595
UniProt:
A0A7Z2JA52
LinkDB
All DBs
Position
1:complement(2678331..2680457)
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AA seq
708 aa
AA seq
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MNVFFEESGSFKAGNVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELLEQADAA
AQEIDLDFLWECAPADEFAYTTLASEYFGETYGPVERAALVLRLHGSPVYFRRKGRGQYQ
RAPEEQLKMALASLERKRQQALVQAGYEEELKAGGLPEAFKGKALGLLTKPDKNSIEYKA
LEAAAAARGISMPRLMLECGGIASPRALHEARFLADFFPHGTGFPPVEVGTLPEDLPDAA
EHVQAFSIDDVTTTEIDDAFSIEHLADGRVRIGIHIAAPALGIERGDTADTIARTRLSTV
YMPGDKITMLPDDFVDAFTLKEGGLRPALSLYCIVNRETQEIVATETRAERVFVKSNLRH
NTLDEVVTEETLAAGTGEYAHKDDIAVLWPFAQALFEKRQQARAGYGLRREVQRNTDFNF
YVDGEHVTISPRRRGSPLDLIVAELAILANSTWGAFLHDHGVPGIYRSQRAFGAPSGPKR
TRMQTNAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVEHGVAAKLVAPFKPKDADL
FAVVQGFDETYTAYADHQRRMEYFWCLRWLQQEMRGEGGREPRREFPASVVKDDLVRFEE
VPLLMHVPALGVHARGTRLMMEVLSIDELTIEASVRMLRVLDAPVVTSGEQAEEDAGEDE
ELIEAADESAQSEAEAVAEADEGEGETASDAPAPAEQSSEQHATEPRE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttctttgaggaatcgggcagtttcaaggccggcaacgtgctgtcgcgtcaa
ggcgacgcgttccaggtcgagctgcccggcgggcggcgcgccaaggtgcgcgcgaaagac
gtgctgatcgagttcgagaagccggcggcgagcgagctgctggagcaggcggacgccgcg
gcccaggagatcgatctcgacttcctctgggagtgcgcgcccgcggacgaattcgcctac
acgacgctggcgagcgaatacttcggcgaaacctatggccctgtcgagcgcgccgcgctc
gtgctgcgcctgcatggttcgcccgtgtacttccgtcgcaagggccgcggccagtatcag
cgcgcgcccgaagagcagctcaagatggcgctcgcctcgctcgagcgcaagcgtcagcag
gcgctggttcaggccggctacgaagaggaactgaaggcgggcgggctgcccgaggcgttc
aagggcaaggcgctcggactcctcacgaagcccgacaagaattccatcgaatacaaggcg
ctcgaggcagcggccgccgcgcgcggcatttcgatgccgcgcctcatgctcgaatgcggc
ggcattgcttcgccgcgcgcgctgcacgaggcgcgcttcctcgcggacttcttcccgcac
ggcaccggcttcccgcccgtcgaagtgggcacgctgcccgaagacctgcccgacgccgcc
gagcacgtgcaggcgttctcgatcgacgacgtcacgacgaccgaaatcgatgacgcgttt
tccatcgagcatctggccgacggccgcgtgcgtatcggcattcacatcgcggcgccggcg
cttggcatcgagcgcggcgacacggcggatacgatcgcgcgcacgcgcctgtcgacggtc
tacatgcccggcgacaagatcacgatgctgcccgacgatttcgtcgacgccttcacgctc
aaggaaggcggtctgcgcccggcgctgtcgctctactgcatcgtgaaccgcgagacgcag
gaaatcgtcgcgaccgaaacgcgtgccgagcgcgtgttcgtgaagagcaatctgcgtcac
aacacgctcgacgaggtcgtcaccgaagagacgctcgcggcgggcaccggcgagtatgcg
cacaaggacgacatcgccgtgctgtggccgttcgcgcaagcgctcttcgagaagcgccag
caggcgcgcgccggttatggcctgcgccgcgaagtgcagcgcaacaccgacttcaacttc
tatgtggacggcgagcatgtgaccatctcgccgcgccgccgcggatcgccgctcgatttg
atcgttgccgagctggcgattctcgcgaactccacatggggcgctttcctgcacgatcat
ggcgtgccgggcatctatcgctcgcagcgtgcgttcggcgcgccgagcggccccaagcgc
acgcgcatgcaaaccaacgccgcgccgcacgaaggcctcggcgtcgcgcagtatgcgtgg
agcacttcgccgctgcgccgctatgtggacctcgtgaaccagtggcaattgctcgcgtgc
gtggagcatggcgtggccgccaagctcgtcgcgccgttcaagcccaaggacgccgatctg
ttcgccgtcgtgcagggcttcgacgagacctacaccgcgtacgccgaccatcagcgccgc
atggagtacttctggtgcctgcgctggctccagcaggaaatgcgcggcgagggcggccgc
gagccgcgccgcgaattcccggcgagcgtggtgaaggacgacctcgtgcgctttgaagaa
gtgccgctgctcatgcacgtgccggcgctcggcgtacacgcccgcggtacgcgactgatg
atggaagtgctgtcgatcgacgagctgaccatcgaggcttcggtgcgcatgctgcgtgtg
ctcgacgcgcccgtcgtaacgagcggcgagcaagcggaagaggatgcgggcgaggacgaa
gaactgatcgaagccgccgacgagtccgcgcaaagcgaagcggaagccgtcgcggaagcg
gacgaaggcgaaggcgagacggccagcgatgcgcccgcgccagcagaacaatcgagcgaa
cagcacgctacggagccgcgcgaatga
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