KEGG   Paraburkholderia acidiphila: FAZ97_20425
Entry
FAZ97_20425       CDS       T07262                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pacp  Paraburkholderia acidiphila
Pathway
pacp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pacp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FAZ97_20425 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pacp03400]
    FAZ97_20425 (ligD)
Enzymes [BR:pacp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FAZ97_20425 (ligD)
DNA repair and recombination proteins [BR:pacp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FAZ97_20425 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QGZ57286
UniProt: A0A7Z2G8T1
LinkDB
Position
2:complement(1304981..1307497)
AA seq 838 aa
MAPTRDRDPQSPPLSRYRKKRDFGVTPEPAPLAASQSVEPGHPAFVVQKHWASRLHYDFR
LELDGVLLSWAVPKGPCYDPKEKRMAIHVEDHPVEYSSFEGTIPPRHYGAGDVIVWDRGT
WEPVGDAREGMAAGKLVFRLHGEKLAGLWELVRISKPGDKQDQWMLFKKRDAWAQPLAQY
DVIKALPDSVTVKPLGLVEEREPRGARPARSATPQVDLGAAVTAPLPAKLEPQLATLAAS
LPTSGDWITEAKLDGYRMLSRVAKGQVRLITRGGQDWTAKFPELATEVRALALDNAWLDG
EITVLKNGIPSFAALQDAIDGAARQDIVYFLFDLMYFNGKDLRKVPLWARRALLAQLLEN
AGEHIRFSQDFEAPATQLFEAASGLGLEGLMLKRRDATYESGRTQTWLKAKSRLRQELVI
CGFTARGGKDGEIGSLLLGYYVDGKLRDAGSVGTGWDARTARDLWTRLTPLEADAAPFDV
DVARPRRWSRRSAGSERWVRPELVAEVEFADWTADGVVRHASFRGLRIDKPPGGVIREGG
KTQPPDPQPKLKITHPERVVDPSTGITKADLVRYYASIAERILPHLKARPLAMVRAPDGI
AEPLFFQKHAERTAMPGLTAHDRALWPKHPPLLTVDTVEALLSAAQMNVVEFHTWNSTVR
RLDKPDRVIFDLDPGEGVKWGRVQEAALLVQALLSELGLQAWLKTSGGKGLHVVVPLAPR
LGYEAVKAFSQAFVRHLAKTIPERFSATAGASNRIGKVYVDYLRNGMGQTTAAAFSARAR
AGMGVSMPVSWEQLNDLKSGAQWTAQTAREYLSFQQRDPWADYWAAAQSLASAIKRLE
NT seq 2517 nt   +upstreamnt  +downstreamnt
atggcccccacccgcgaccgcgatccgcagtctccgcctctgtcccgctatcgtaaaaag
cgggatttcggtgtcacgcccgaacccgctccgttggctgccagccagtccgtcgagccc
ggacatcccgcctttgtcgtgcagaagcactgggcaagccggctgcactacgattttcgg
ctcgaactcgacggggtgctgctgtcgtgggccgtacccaagggcccttgctacgacccg
aaggaaaaacggatggccatccacgtggaggaccatccggtcgaatattccagcttcgaa
gggacgattccccccaggcactacggcgccggcgacgtcattgtctgggaccgcggcaca
tgggagcctgtcggcgatgcgcgggaggggatggcggctggcaagctggtcttccggctc
catggcgaaaagctcgcgggcctttgggaactggttcgcatatcgaagcccggcgacaaa
caagaccaatggatgctgttcaagaagcgcgacgcgtgggcacagccgctggcgcaatac
gatgtcatcaaggcgcttcccgacagcgtcacggtgaagccgctcggactcgttgaggag
cgcgagccgaggggggcgaggcccgcgcgcagcgcaacgccccaggtggaccttggcgct
gcggtgaccgcgccgctgccagccaaactcgagccgcagctcgcgaccctcgcggcttcg
ctgcccacgagcggcgactggataaccgaagccaaactcgacggctatcgcatgctgtcc
cgtgtcgccaaaggacaagtgcgcctcatcacgcgcggcggacaagactggacggcgaag
tttcccgagcttgcaacagaggtcagagcgcttgcgctcgacaatgcgtggctggatggt
gaaatcaccgtcctcaaaaacggcattccgagcttcgctgcgctgcaagatgcgatagac
ggcgcggcaagacaggacatcgtctacttcctgttcgacctgatgtacttcaacggcaaa
gacctcaggaaggtgcccctatgggcgaggcgcgcccttctcgcgcagcttctggaaaat
gcgggcgagcacatccggttcagccaggacttcgaggcgcccgctacccagttgttcgag
gcggcctcgggcctgggcctggaaggcctcatgctcaagcgccgcgacgcgacctatgaa
tcggggcgcacgcaaacatggctcaaggcgaaatcccggctgcggcaggaactggtgatc
tgcggcttcacggcccgtggcggcaaggacggggagattggcagcctgctgctgggctat
tacgtcgatggcaagcttcgcgacgccggaagcgtcggcaccgggtgggacgcgcggact
gcgcgggacctgtggacgcggctgacgcctctcgaagcggatgcggcaccatttgatgtc
gacgtggcgaggccgcgccgctggtcccggcgctcggccggcagcgagcgctgggtgcgc
cccgaactcgtcgcggaggtcgaattcgcggactggacggccgatggcgtcgtccggcat
gcctcgttcagagggctgcgaatcgacaagccgccaggcggcgtgatacgggagggcgga
aagacgcagccgccggaccctcagccgaagctgaaaatcacgcatccggaacgcgtcgtc
gacccatcgacggggatcacgaaggcggacctggtgcgctactacgcgagcatcgcggag
cggatattgccgcatctgaaggcgcggcccctcgccatggtgcgcgcccccgacggcatt
gcggaaccgttgttcttccagaagcatgcggagagaacagccatgcccggcctgacggct
cacgaccgcgcactgtggccgaaacatccgccgctgctgaccgtcgacaccgtcgaggcc
ctgctgtcggcggcacaaatgaatgtcgtggagtttcacacgtggaattcgacggttcga
cggctcgacaagcccgaccgcgtcatcttcgacctcgacccgggcgagggcgtgaaatgg
ggacgtgttcaggaagccgcgctcctcgttcaagcgctgctctcggaactgggtttgcaa
gcctggctgaaaacgagcggcgggaaaggattgcatgtggtcgtgccgcttgccccgagg
ctcggctacgaggcggtcaaggcgttctcgcaggccttcgtgcgacatctcgcgaagacc
attcccgagcgcttttcggcgaccgccggggcgtcgaaccgtatcggcaaggtctacgtc
gattacttgcgcaacggcatggggcaaacgaccgccgcggcattttccgctcgggcgcga
gccggaatgggcgtctcgatgccggtttcctgggagcagttgaacgacctgaagagcggg
gcgcagtggacggcgcagacggcccgcgagtacctcagcttccagcagcgcgacccgtgg
gcggattactgggcggcggcgcaatcattggcgtcggcgataaagcgcctagaatga

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