Pigmentiphaga aceris: FXN63_00770
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Entry
FXN63_00770 CDS
T06198
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXN63_00770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacr03019
]
FXN63_00770
Enzymes [BR:
pacr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FXN63_00770
Messenger RNA biogenesis [BR:
pacr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FXN63_00770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
ERCC3_RAD25_C
UTP25_NTPase-like
MDMPI_N
AAA_22
Cas3-like_C_2
HI1480
DUF3025
Motif
Other DBs
NCBI-ProteinID:
QEI09050
UniProt:
A0A5C0B6I0
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All DBs
Position
170908..172395
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AA seq
495 aa
AA seq
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MRAIAEAGYTQPTPIQSQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILQLLSEKPLALQK
PGRPRCLIMTPTRELTAQVEESVQTYGKYLKLKSMVMFGGVNINPQINALRKNVDILVAT
PGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQTLLYSATFSD
EIRTLAKTVLNNPGEVSVARRNTTTELVQQTVYMVHKDQKRDLLAHLIRTHEWHQVLVFT
RTKHGANRLAEKLQKDGISAAAIHGNKSQAARTKALAGFKENTVRVLVATDIAARGLDID
QLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVEGEEVKLLKGIEKLIKRQIEQVP
LPAFTVRPKTAEDSDERPPRQPRGPGRGGNAGGGNAGRSAPRGDAPRSAGSGRGDASRGG
RNDGRNDGRGARDGAPASRGNSGNGGRGNASGEGHGRSGNPARSANTSSRGAEPRGGIAG
RPEQRAALFSLKSQG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ctgcgcgcgattgccgaagccggctatacccagcccacgccgatccagtcgcaagccatt
ccgcaagtactcaagggcggcgacctgctggccgctgcccagaccggcaccggcaagacc
gcaggtttcacgctgccgattctgcaattgctgtcggaaaagccgctggcgctgcaaaag
cccggccgcccgcgctgcctgatcatgaccccgacgcgtgagttgaccgcgcaggtcgaa
gagtcggtgcagacctacggcaagtacctgaagctgaagtcgatggtgatgttcggcggg
gtgaacatcaacccgcagatcaacgcgctgcgcaagaatgtcgatattctggtggccaca
cccggccgcctgctggaccacgtgggccagaagacgctggacttgtccggcgtggaaatc
ctggtgctggacgaagccgaccgcatgttggacatgggcttcatccgcgacatccgcaag
gtgctggccctgttgcccaagcaacgccagactctgctgtattcggccaccttctcggat
gaaatccgcacgctggccaagactgtgctgaacaacccgggcgaagtgtcggtggcgcgt
cgcaacaccaccaccgaactcgtgcagcaaaccgtgtacatggtccacaaggatcagaag
cgcgatctgctggcgcacttgattcgcacccacgaatggcatcaggtgctggtgttcacg
cgcaccaagcacggtgccaatcgtctggctgaaaagctgcagaaggacggtatcagcgcc
gccgcgatccacggcaacaagagccaggcggcgcgcaccaaggcgctggccggcttcaag
gaaaacaccgtgcgcgtgctggtggcgaccgacatcgctgcccgcggtctggacatcgac
cagctgccgcaagtggtgaacttcgagctgccgaatgtgccggaagactatgtgcaccgt
atcggccgtactggccgtgcaggctcgtcgggcgctgccgtgtcgctggtcgaaggcgaa
gaagtgaagctgctgaagggcatcgaaaagctgatcaagcgccagatcgagcaagtgccg
ctgcctgccttcaccgttcgccccaagacggccgaagacagcgacgagcgtccgccgcgc
cagccgcgcggtccgggccgtggcggtaacgcgggcggtggaaatgccggtcgcagcgcg
ccgcgtggcgatgcgccgcgcagtgccgggtcgggacgtggtgacgcgtcgcgcggtggt
cgcaatgacggtcgcaatgacggtcgtggcgcgcgtgacggtgcacccgcgtcgcgtggc
aacagtggcaacggcggccgcggcaacgcgtctggcgaaggccatggccgtagcggcaat
ccggcacgttccgccaatacctcgtcgcgtggcgcagagccgcgtggtggtatcgccggc
cgtcctgagcagcgcgccgcgctgttctcgctcaagtcgcagggctga
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