Pigmentiphaga aceris: FXN63_09255
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Entry
FXN63_09255 CDS
T06198
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FXN63_09255 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacr03019
]
FXN63_09255 (rnr)
03016 Transfer RNA biogenesis [BR:
pacr03016
]
FXN63_09255 (rnr)
Enzymes [BR:
pacr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FXN63_09255 (rnr)
Messenger RNA biogenesis [BR:
pacr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FXN63_09255 (rnr)
Transfer RNA biogenesis [BR:
pacr03016
]
Prokaryotic type
tRNA degradation factors
FXN63_09255 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
HTH_11
CSD
HTH_20
WHD_RNase_R
HVO_A0261_N
PF0610-like_N
ATP-synt_ab_Xtn
Motif
Other DBs
NCBI-ProteinID:
QEI06002
UniProt:
A0A5C0AUD0
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All DBs
Position
2181088..2183505
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AA seq
805 aa
AA seq
DB search
MATRSNNNAPGTPPDYDPDVPSREEILAALRKADKPLSPDELADVMGVTRDATLIGFDRR
LNAMERDGQLLPNRKGVLLLATKLDFIAGRVQGHRDGFGFLIRDDGGQDVFLSPKEMQKV
LHGDRVLLKLSGGDYRGKPDGMIVEVIERRTNKLVGRFLNERGVFIVVPEDQRIKHDILV
PPGEQGDAEHGQVVSVEIVTQPTRHSQPLGRVVEVLGEIDDPGMEIEIAVRKFDVPHEFS
QAALDQAARLPDAVRRADLKGRIDLRDVPLITIDGEDARDFDDAVYCEPVELGTGTRKRP
GWRLIVAIADVSHYVTPGDALDHDAVERSTSVYFPRRVIPMLPEKLSNGLCSINPEVDRL
VLVCDMVIPATGSKAGTVQAYQFYNAVMYSHARTTYNEVWGALQQPGGPAARKHNHVLPQ
IHNLYSLYQLLAAARKTRGAIDFDTVETKIVCNELGKIERIVAHTRNDAHKVIEECMLAA
NTCAADFTERSKHPGLYRIHEGPTIEKLQSLRTFLKTIGLTLGGGEKPTAADYSAFLDSI
RGRPDHALLQTMCLRSMQQAMYSPDNVGHFGLAYPAYAHFTSPIRRYPDLLTHRAIKALL
VGRRYVPEPVGDTTITSKNMKEHEHGIWERLGLQCSSNERRADDASRDVEAWLKCWFVRE
RVGETFTGTVTGVATFGVFITLDELYVEGLVHVSELGTDYFQFNDSLHELRGERTGIRYR
LTDKVQVQVARVDLEARRIEFKLVQGVSYDGLRKQAQRESEPEHRVRKAAGAKPDRGQLG
YGGEARSAKTGKRAAASKRSARKNR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
ttggcaactcgatccaataataacgctccgggcactccgcccgattacgatcccgacgtc
cccagccgggaagaaattcttgcggcgcttcgcaaagccgacaagcccttgtcgccggac
gaactggccgacgtgatgggcgttacccgcgacgccaccttgatcggctttgaccgccga
ctcaatgcgatggaacgcgacgggcaattgctgcccaaccgcaagggcgtcctgctgctt
gcgaccaaacttgatttcatcgctggccgggtgcaagggcaccgtgacggcttcggtttc
ctgatccgcgacgatggcggtcaggatgtgttcctgtcgcccaaggaaatgcagaaagtg
ctgcatggcgaccgggtgctgttgaagctgtccggtggcgactaccgtggcaagcctgac
ggcatgatcgtggaagtgatcgagcgtcgcaccaacaagctggtggggcgcttcctgaat
gagcgcggcgtgttcatcgtcgtgcctgaagaccagcgtatcaagcacgacatcctggtg
ccgccgggcgagcagggcgatgctgaacacggtcaggtcgtgtccgtggaaatcgtcacg
cagcccacgcgccattcgcagcccttgggccgtgtggttgaagtgctgggtgagatcgat
gatcccggcatggaaatcgaaattgcggtgcgcaagttcgacgtgccgcacgagttctcg
caagccgcgctggaccaggctgcccgcttgcccgatgccgtgcgccgcgccgatttgaaa
ggccgcatcgacctgcgcgacgtgccgttgatcaccattgatggtgaagacgctcgcgat
ttcgacgatgctgtgtattgcgaaccggttgaacttggcactggcacgcgcaagcgtccg
ggctggcggctgatcgtcgccattgccgacgtcagccactacgtcacgcccggcgatgcg
ctggatcacgatgcggtcgagcgcagcaccagcgtgtacttcccgcgccgcgtgattccg
atgctgcccgaaaagctgtccaacgggctgtgctcgatcaaccctgaagtcgaccgcctg
gtgctggtctgcgacatggtgattccggccactggttccaaggcgggcacggtgcaggcc
taccagttctacaacgccgtgatgtattcacatgcccgcactacctataacgaggtatgg
ggcgcgttgcagcaaccgggtggtccggctgcccgcaagcacaatcatgtgctgccgcag
atccacaacctgtactcgctgtatcagttgctggcggcggcgcgcaaaacgcgtggtgcc
atcgacttcgatacggtcgaaaccaagatcgtctgcaatgaactcggcaagatcgaacgc
atcgtcgcgcacacgcgcaacgatgcgcacaaggtgattgaagagtgcatgctggcggcc
aacacctgcgcggcggacttcaccgagcgcagcaagcaccccggcctgtatcgcattcac
gaaggtccgacgatcgagaagctgcaatccttgcgcaccttcctgaagacgatcggcctg
acgctgggtggtggcgagaagcccacggcggcagactattcggccttcctggacagcatt
cgcggtcgtcccgaccacgcgctgttgcagaccatgtgtctgcggtccatgcaacaggcc
atgtacagccccgacaacgtcggtcacttcggtttggcctacccggcctatgcgcacttc
acgtcgccgatccgtcgttatcccgacttgctgacgcaccgtgcgatcaaggccttgctg
gtcggccgtcgctatgtgcccgagcctgtcggcgatacgacgatcacgtccaagaacatg
aaggaacacgaacacggcatctgggaacgcctgggtctgcagtgctcgtccaacgagcgt
cgcgccgacgatgcatcgcgtgacgtggaagcgtggttgaagtgctggttcgtgcgcgag
cgcgtgggcgagaccttcacgggtaccgtcactggcgtggctacctttggtgtgttcatc
acccttgacgagctgtatgtcgaaggcctggtgcatgtgtccgagcttggcaccgactac
ttccagttcaacgattcgctgcatgaattgcgcggcgagcgtaccggcatccgttatcgc
ctgaccgacaaggttcaggtgcaggttgcccgggtcgatctggaagcgcgccgcatcgag
ttcaagctggtgcaaggggtcagctacgacggtctgcgcaagcaagcccagcgtgaaagc
gaacccgagcatcgcgtgcgcaaggcggcaggtgcaaagccggatcgtgggcagctgggt
tatggcggcgaagcgcgcagcgccaagactggcaagcgtgctgctgcatccaagcgctcg
gcgcgcaaaaaccgttaa
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