Paraburkholderia acidisoli: FAZ98_00020
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Entry
FAZ98_00020 CDS
T07287
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pacs
Paraburkholderia acidisoli
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pacs03016
]
FAZ98_00020
Enzymes [BR:
pacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FAZ98_00020
Transfer RNA biogenesis [BR:
pacs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FAZ98_00020
Prokaryotic type
tRNA splicing ligases
FAZ98_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
zf-DPOE
Motif
Other DBs
NCBI-ProteinID:
QGZ60251
UniProt:
A0A7Z2GE99
LinkDB
All DBs
Position
1:complement(5689..6912)
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AA seq
407 aa
AA seq
DB search
MSELDYQVMELAHGKPVKMWTHGVAVEEEARAQLRNTAQMPFVFRHIAVMPDVHLGKGST
IGSVIPTQGAIIPAAVGVDIGCGMMAARTTLTAADLPDSLAGLRGAIERAVPHGRAPGRR
DPGAWGNRAPATVDAMWKTLEPGFRRIVEKQPELAKTNHYTHLGTLGTGNHFIEVCLDES
ERVWFMLHSGSRGVGNAIGSLFIELAQEDMRQHIANLPDRNLAYLTEGSEHFDDYVEAVG
WAQDYARLNRQAMMEAVLGAARVAVGKPFEIDGHAVNCHHNYVQRERHFGADVLVTRKGA
VAAQKGQLGIIPGSMGAKSFIVRGLGNAESFCSCSHGAGRTMSRTEAKRRFTVADQVAAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaactcgattatcaggtgatggaactggcgcacggcaagcccgtgaaaatgtgg
acgcacggcgtggccgtcgaggaagaagcgcgcgcgcaattgcgcaacacggcgcagatg
ccgttcgtgttccggcatatcgcggtgatgcccgacgtgcatctcggcaagggctcgacc
attggcagcgtgatcccgacgcaaggcgcgatcattccggccgcggtgggcgtggatatc
ggctgcggcatgatggccgcgcgcacgacgctcacggccgcggatctgcccgactcgctc
gccggattgcgcggcgcgatcgagcgcgcggtgccgcatggacgcgcgccgggacgccgc
gatccgggtgcgtggggcaatcgcgcaccggccacggtggacgcgatgtggaagacgctc
gagccgggctttcggcgcatcgtcgaaaagcagccggagctcgcgaagacgaatcactac
acgcacctcggcacgctcggcacgggcaatcacttcatcgaagtctgcctcgacgaaagc
gaacgcgtctggttcatgctgcacagcggttcgcgcggcgtgggcaatgcgatcggcagt
ctgttcattgaactggcgcaggaagacatgcgccagcacatcgccaatctgccggatcgc
aatctcgcgtatctcaccgaaggcagcgagcatttcgacgattacgtggaagccgtgggc
tgggcgcaggattacgcgcgcctgaaccgtcaggcgatgatggaagccgtgctcggcgcg
gcgcgcgtggccgtcggcaagccgttcgagatcgacgggcacgccgtgaattgccatcac
aactacgtgcagcgcgaacgtcatttcggcgcggacgtgctcgtcacgcgcaagggcgcg
gtcgcggcgcagaagggccagctcggcatcattccggggtcgatgggcgcgaagagtttc
atcgtgcgcggactcggcaacgccgaaagcttctgctcatgcagccacggcgcgggccgc
acgatgagccgcaccgaagccaaacgccgcttcacggttgcggatcaggtggccgcgacg
cagggcgtggaatgccgcaaggacgcgggcgtggtggacgagatcccgatggcgtacaag
gacatcgacgcggtgatggccgcgcagcgcagtctcgtcgaagtcgtgcacacgttgcgg
caggtggtgtgcgtgaaggggtga
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