Paraburkholderia acidisoli: FAZ98_04065
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Entry
FAZ98_04065 CDS
T07287
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ98_04065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacs03019
]
FAZ98_04065
Enzymes [BR:
pacs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ98_04065
Messenger RNA biogenesis [BR:
pacs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ98_04065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
AAA_30
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QGZ60980
UniProt:
A0A7Z2JFB6
LinkDB
All DBs
Position
1:950894..952408
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AA seq
504 aa
AA seq
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MSDTAVKPSTATFDQFGLAPDILRAIQDQGYTTPTPIQAQAIPVVLTGQDVLAAAQTGTG
KTAGFSLPIIQRLLPNASTSASPARHPVRALILTPTRELADQVANNVRSYAVHTPLRSAV
VFGGVDMNPQSDELRRGVEILIATPGRLLDHVQQKTTNLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLAATYLRSPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQIEKQGIVAAAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSL
CSPNEKKQLADIEKLIKRPLTVERLQVDTPIAHHENGGRRRERDGYEARGERSERGERTD
RNERSERGGHRRSTSFDRPHHRSQPVDDFFLKPYEPSPAARSKAEDNAPAAAAAPQKSAQ
SKQPLAALLGGLGSSWRNKPTPSN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcaagcccagcactgcgaccttcgaccagtttggccttgccccc
gacatcctgcgggccatccaggatcagggctacacgacgcccacgccgatccaggcgcag
gcgattcccgtcgtgctcacgggccaggacgtgctggctgcggcgcaaacgggtaccggc
aagacggcgggcttctcgctgccgatcatccagcggctgttgccgaacgcgagcacgagc
gcctcgcccgcgcgccatccggtgcgcgcgctgatcctgacgcccacgcgcgagctggcg
gaccaggtcgccaacaacgtgcgctcctacgcggtgcacacgccgctgcgcagcgcggtg
gtgttcggcggtgtcgacatgaatccgcagtcggacgaactgcgccgcggcgtggaaatc
ctgatcgcgacgccgggccgcctgctcgatcacgtccagcagaagaccacgaacctgggt
caggtgcagatgctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcttgccc
gacctccagcgcatcctgaacctgctgccgaaggagcgtcagacgctgctgttctcggcc
acgttctcgccggaaatcaagaagctcgccgcgacctacctgcgctcgccgcagacgatc
gaagtcgcgcgcagcaattccacggccaccaacgtcacgcagatcgtctacgaagtcgcc
gagggcgacaagacgggcgcggtcgtgcaactgattcgcgagcgcagcctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgtcagatcgagaagcag
ggcattgtcgcggcggcgattcacggcgaccggtcgcagagcgagcgcatgcaggcgctc
gacgcgttcaagcgcggcgaaatcgaagcgctggtggcgaccgacgtggccgcgcgcggt
ctcgacatcgccgaactgccggccgtgatcaacttcgacctgccgttcagcgccgaagac
tacgtgcaccgtatcggccgcacgggccgcgcgggcgcctcgggcgacgcgctgtcgctg
tgcagcccgaatgaaaagaagcagctcgccgacatcgaaaagctcatcaagcgcccgctg
acggtcgagcgcctgcaagtcgacacgccgatcgcgcatcacgaaaacggcggccgccgc
cgcgagcgcgacggttacgaggcgcgcggcgagcgcagcgaacgtggcgaacgcacggac
cgcaacgagcgcagcgagcgcggcggtcatcgccgttccacctcgttcgatcgtccgcat
catcgttcgcaaccggtcgacgacttcttcctgaagccctacgagccttcgccggccgcc
cgttcgaaggcggaagacaacgcgccggccgcggccgccgcgccgcaaaagtccgcgcag
tcgaagcagccgctcgcggcgctgctgggcggtctgggatcgtcgtggcgcaacaagccg
acgccttcgaactaa
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