Paraburkholderia acidisoli: FAZ98_04080
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Entry
FAZ98_04080 CDS
T07287
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03030
DNA replication
pacs03430
Mismatch repair
pacs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ98_04080 (dnaE)
03430 Mismatch repair
FAZ98_04080 (dnaE)
03440 Homologous recombination
FAZ98_04080 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacs03032
]
FAZ98_04080 (dnaE)
03400 DNA repair and recombination proteins [BR:
pacs03400
]
FAZ98_04080 (dnaE)
Enzymes [BR:
pacs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FAZ98_04080 (dnaE)
DNA replication proteins [BR:
pacs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FAZ98_04080 (dnaE)
DNA repair and recombination proteins [BR:
pacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FAZ98_04080 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
QGZ62863
UniProt:
A0A7Z2GJG4
LinkDB
All DBs
Position
1:954618..958193
Genome browser
AA seq
1191 aa
AA seq
DB search
MSSMSDPRFVHLRVHSEFSIADGIVRLDDLVKAAAKDGQGALALTDLGNAFGLVRFYQEA
RGKGVKPIAGCDVWIMNPDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAEVD
VAWLEAGLGEGLLALSGAQQGDVGLALAAGNVESAKRHAQRWATLFPNGYYIELQRCGQP
GAEQYIEQAVALASQLKLPVVATHPMQFMTDEEYTAHEARVCISEGDILANPRRQKRFTT
DQRFRTQQEMAALFADLPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEQRLEQLFPQQAERDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLIPFKPGKHVTIAD
AMKEEPLLQERYDNEDEVHQLLDLAQLVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVK
HREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLTNGMKVLPPDVNASAYRFEPVADANVAEGRRSRTIRY
GLGAIKGSGQNAIEEILRAREEGGPFKDLFDFCERIDRRLVNRRTIEAMIRAGALDSIHA
NRAQLLASVSMAMEAAEQASANAMQAGLFDMGDAPLAAHELVDEPAWDDKRRLQEEKGAL
GFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDG
TGQCEVTVFNEQYEAHKALFKEDELLVVQGGARNDAFTGGIRFTVDTVMDLERARSRYAQ
AVKVQMNGNANALALRSVLEAYRAKPDDSLPAPVAETRGRGGRDGGGFGGGRGREREQVV
IPNGLAVQIVYRNDRAEGEVRLGDAWRVKPTDDLLAALRGEFAGSSIEIVY
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atctcgtccatgtcagatccccgcttcgtccatctccgcgtccattccgaattctcgatt
gccgacggcatcgtgcgtctcgacgacctcgtcaaggcggcggccaaagacggtcagggc
gcgctcgcgctcaccgacctcggcaacgctttcggcctcgtccgtttctaccaggaagcc
cgcggcaaaggggtcaaacccattgccggctgcgacgtctggatcatgaatcccgacgac
cgcgacaagccttcgcgcctgttgctgctcgtgaaggacaagcgcggctacctgaacctg
tgcgaactgctctcgaaggcgtggctcacgaaccagtatcgcggccgcgccgaagtcgac
gtcgcgtggctcgaagcgggtctcggcgaagggctgctcgcgctctcgggcgcgcagcag
ggcgacgtgggtctcgcgctcgcggcgggcaacgtggaaagcgcgaagcgtcatgcgcaa
cgctgggccacgctgttcccgaacggctattacatcgaactgcaacgctgcggccagccg
ggcgcggagcagtatatcgagcaggcggtggcgctcgcgtcgcagctgaagctgcccgtg
gtcgccacgcatcccatgcagttcatgaccgacgaggaatacaccgcgcacgaagcgcgc
gtgtgcatctcggagggcgacattctcgcgaatccgcgccgccagaagcgcttcacgacc
gaccagcgttttcgcacccagcaagaaatggccgcgctgttcgcggacctgccctcggcg
gtcgcgaacaccatcgaaatcgccaagcgctgcaacctcacgctcgaactcggcaagccc
aagctgccgctctttcctacgcccgacggcatgtcgctcgacgactacctcgtgcaactc
tcgaaggaagggctcgagcagcgcctcgaacagctgttcccgcagcaagccgaacgcgac
gcacagcgcgagacgtactacgcgcggctcgacttcgagtgcggcaccatcatcaagatg
ggcttcccgggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggc
gtgccggtcgggccgggccggggctcgggcgcgggctcgctggtcgcctacgcgctcggc
attaccgacctcgacccgctgcgctacaacctgctgttcgaacgcttcctgaatccggaa
cgcgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtcatt
cagtacgtgaaggagaagtacggcgcggacgccgtctcgcagatcgccaccttcggcacc
atggcggcgaaggcggcggtgcgcgacatcggccgcgtgctcgacctcggctacaacttc
accgacggcgtggccaagctcattccgttcaagccgggcaagcacgtcaccatcgccgac
gcgatgaaggaagagccgctcctgcaggagcgctacgacaacgaagacgaagtgcatcag
ctgctcgatctcgcgcagctcgtggaaggtctcacgcgtaacgtgggcatgcacgcgggc
ggtgtgctgatcgcgccgggcaagctcacggacttctgcccgctctacacgcagggcgac
gaaagcggcgtggtgagccagtacgacaaggacgacgtggaagccgtcggcctcgtgaag
ttcgactttctgggcctgaccacgctcacgattctcgactgggccgagcgctacattcgc
cgtctcgacccgtcgaaggaaaactggtcgctcgcgcaggtgccgctcgacgacccggcg
tcgttctcgatcctcaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcaaggcatgctgaaagacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtg
gccttgtaccgtccgggcccgatggacctgatcccgagcttctgcgcgcgcaagcacggc
cgcgaagtggtggagtaccccgacccgcgcgtcgaaccggttctgaaagagacctacggc
atcatggtctatcaggaacaggtgatgcagatggcgcagatcatcggcggctactcgctc
ggcggcgccgatttgctgcgtcgcgcgatgggcaagaagaagcccgaggaaatggtcaag
caccgcgaaatcttcgcggaaggcgcggccaggaacggcctcacgcgcgagaaagccgac
gaaaccttcgacttgatggaaaagttcgcgggctacggcttcaacaagtcgcacgcggcc
gcctacgccttgctcgcctatcacacggcgtggctgaaggcgcaccatccggcggaattc
atggcggccaatatgtcgctcgccatggacgacaccgacaaggtgaagatcctgttcgaa
gattgcctcacgaacggcatgaaggtgttgccgcccgacgtgaacgcctcggcgtatcgc
ttcgagccggtcgccgacgccaacgtggccgaaggcaggcgctcgcgcacgatccgctac
ggtctgggcgcgatcaagggcagcggccagaacgccatcgaagaaatcttgcgcgcgcgc
gaagaaggcggtccgttcaaggacctgttcgacttctgcgagcgcatcgaccgccgtctc
gtgaatcgccgcacgatcgaggccatgatccgcgcgggcgcgctcgactcgatccacgcg
aatcgcgcgcaattgctcgcctccgtttccatggcgatggaggccgccgagcaggcgagc
gccaacgccatgcaggcgggtctcttcgacatgggcgacgcgccgctggcggcgcacgaa
ctcgtcgacgaacccgcgtgggacgacaagcgccggctccaggaagaaaagggcgcgctc
ggtttctatctttcgggccacctgttcgacgcgtacaaggacgaggtgcgccgcttcgtg
cgccagaagatcggcgaactcaaggagggccgcgacaagctggtcgcgggcgtgatcgcc
tcgttgcgcacgcagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggc
accggtcagtgcgaagtgacggtgttcaacgagcagtacgaggcgcacaaggcgctcttc
aaggaagacgagctgctggtggtgcagggcggcgcgcgtaacgacgcgttcacgggcggc
atccgcttcacggtggacacggtgatggatctcgagcgcgcgcgcagccgctacgcgcag
gccgtgaaggtgcagatgaacggcaacgccaacgcgctcgcgctgcgcagcgtgctcgaa
gcgtaccgcgccaaacccgacgactcgctgccggcgccggtggccgaaacgcgtgggcgc
ggcggccgcgatggcggcggtttcggcggcggccgtggccgcgagcgcgaacaggtcgtg
attccgaatggcctcgccgtgcagatcgtttatcgcaacgaccgcgcggaaggcgaggtg
cgcctcggcgacgcctggcgcgtcaagcccaccgacgacctgctcgcggccctgcgcggc
gagttcgccggcagctcgatcgaaatcgtttattga
DBGET
integrated database retrieval system
