Paraburkholderia acidisoli: FAZ98_09400
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Entry
FAZ98_09400 CDS
T07287
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ98_09400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacs03019
]
FAZ98_09400
03009 Ribosome biogenesis [BR:
pacs03009
]
FAZ98_09400
Enzymes [BR:
pacs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAZ98_09400
Messenger RNA biogenesis [BR:
pacs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAZ98_09400
Ribosome biogenesis [BR:
pacs03009
]
Prokaryotic type
rRNA processing factors
FAZ98_09400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGZ61928
UniProt:
A0A7Z2JFG5
LinkDB
All DBs
Position
1:2152626..2155985
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AA seq
1119 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRGARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPDGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQAGTTGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALRHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVGVVLIPNKHLET
PHYKLERLRHDDTRLDDPRASWKMAEEAARELESETGYSKRNAEAKPKQEAAVKGITPER
PAPSAPAKPVPAAPIPAHVVVAPASGGFFGWLKRLFGGEPAAAPAPAPAPAVQQDKAARP
SREARTERGDKTGGDRNRNRRTGGRDAAGRGEGASASSTGGTRTGQAGRREEREPREGRE
PREIREPREAREQREPREAREGRGAREGREPREAREPREPREARVERVERGQDRSDVTAE
AGARGERQERGERRERGERSEQPRRRQPQAEAAEAQEARLDAAAEDLEAPLTDLPEGAAG
TDEDGAPREGEERRRRRRGRRGGRREREIEGVAAGEGAPEGSDEAAPAYTAETHASETHA
VETHAPEAPAAAPAEAHVAHAAQETPQETSVVETRVETVVEAAVVTALPAAAVVAEAGQT
PSTAVTTTPVETVAPEAAEAAEVTTTHAPVEHAPAEAAPLAVDTTPAAEPKAEAPAPVAP
VETIAPVAPVETAAPVASTETAEPAPVAAELPVAREDRVEAAPVEAVEPVQPIVTPEPVQ
QPVEAVQAAPAVIAVTEPAAPVAPVAQTAPASASAKADDLHGMLESAGLVWVNTDAGKLQ
AAQQAAAQVAKPARAPRERKPLPPVDAAPMQQVETSREA
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctgttcaacgcgacacagcaggaagaactgcgtgtcgctatcgtcgat
ggacagaagctgatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaggggatcgtcacccgtatcgagccttcgctcgaagcgtgtttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttccgtgac
ggcgtcgacatgcgcggcgcgcgcattcaggacgccctcaaggaaggccaggaactcatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ctcgccggccgctacctcgtcctcatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgtatcgagggcgacgaccgtcaggaactgcgcgaaaccatggcgcagttgcaactgccg
gacggcatgagcatcatcgcgcgcacggccggcatcggccgctccgccgaagagctccag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagccgcgtcgcaggccggc
acgaccggtcagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgc
gactacttccagcccgacatcggcgaaattctcatcgacaccacggaaatctatgaccag
gcgcgcgccttcatggatatcgtgatgccggacaatgtcaacaaggtgaagcgctaccac
gacgacgtgccgttgttctcgcgcttccagatcgagcaccagatcgagacggcgtactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgaccacaccgaagcgctggtc
gccatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtcgcgcgccagttgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtcgag
caacgcctgaaggacgccctgcgccacgaccgcgcacgcgtgcagatgggcaagatctcg
cgtttcggcctgatggagctgtcgcgccagcgtctgcgcccggccctctcggaaggcagc
cacgtcacctgcccgcgctgtaacggcacgggtcatatccgcgatacggaatcgtcggcg
cttcaggtcctgcgcatcatccaggaagaagcgatgaaggaaaacaccgcggcgatccat
tgccaggtgccggtcgaagtgaccgccttcctgctgaacgaaaagcgttcggaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcatctcgaaacg
ccgcactacaagctcgagcgtctgcgtcacgacgatacgcgtctggacgatccgcgcgcc
tcgtggaagatggccgaggaagcggctcgcgaactcgagtcggaaaccggctacagcaag
cgcaacgccgaagccaagcccaagcaggaagcggcggtcaagggcatcacgcccgagcgc
ccggcgccttcggctccggccaagcccgtgccggccgcgccgatcccggcgcacgtggtc
gtcgcgcccgcgagcggcggtttcttcggctggctcaagcgcctcttcggcggcgaaccg
gcggcggcacccgcaccggctccggctccggccgtccagcaggacaaggcagcgcgtccg
agccgcgaagcgcgtaccgaacgcggcgacaagaccggcggcgaccgcaaccgtaaccgc
cgcaccggcggccgcgacgcggctggccgtggcgaaggcgccagcgcgagcagcaccggc
ggcacgcgcacgggtcaggcaggccgtcgcgaggagcgcgaaccgcgcgaaggtcgcgag
ccgcgtgaaatccgcgagccgcgtgaagcccgcgaacaacgcgagccgcgcgaggcacgc
gaaggccgtggcgcccgtgaaggccgcgagccgcgcgaagcccgcgaaccgcgtgagccg
cgcgaagcgcgtgtcgaacgcgtcgagcgtggtcaggatcgcagcgacgtgacggcggaa
gccggcgcacgcggcgagcgtcaggaacgcggcgaacgccgtgagcgtggcgagcgcagc
gaacagccgcgccgccgccagccgcaggccgaggcagccgaggcgcaggaagcgcgtctg
gatgccgccgcggaagacctcgaggctccgctgacggacctgccggaaggcgcggcaggc
accgacgaagacggcgcaccgcgtgaaggcgaagagcgtcgccgccgccgtcgcggccgt
cgtggcggtcgtcgcgagcgtgaaatcgaaggcgtggcagcaggcgaaggcgcaccggaa
ggcagcgacgaagccgccccggcgtacaccgccgagacgcatgcctccgaaacgcacgca
gtcgaaacgcacgcccccgaagcgcccgcagccgcaccggctgaagcgcacgtcgcgcac
gcggctcaggaaacgcctcaggaaacgtcggtggtcgaaacccgcgtggaaaccgtcgtg
gaagcggctgtggtgacggcgctccccgccgccgccgtggtggccgaagccggtcagacg
ccgtcgaccgcagtgacgaccacgccggtcgaaaccgtcgcgccggaagcggctgaagcc
gccgaagtcacgacgacgcacgcgccggtcgagcacgcccccgccgaagccgcgccgctg
gctgtcgatacgacgccggctgccgagccgaaggcggaagcgcccgctccggtcgcgccg
gtcgagaccatcgctccggtcgcgccggtggaaaccgccgcgccggtcgcatcgacggaa
acggccgagcccgcgcccgtcgccgccgagctgccggtcgctcgcgaagatcgcgtcgaa
gccgcgccagtcgaagcggtcgagccggtccagccgatcgttacgccggagccggtccag
cagccggtcgaagcggttcaggccgcaccggccgtgatcgccgtgaccgaaccggccgcg
ccggtcgcaccggtggcgcaaacggcaccggcatcggcgtccgccaaggccgacgatctg
cacggcatgctcgaatcggctggcctcgtgtgggtcaacaccgacgccggcaagctgcaa
gccgcccagcaggcggccgcgcaggtcgcgaagccggcccgcgcgccgcgcgagcgcaag
ccgctgccgccggtcgacgctgcgccgatgcaacaggtcgaaacgtcgcgcgaggcgtaa
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