Paraburkholderia acidisoli: FAZ98_16885
Help
Entry
FAZ98_16885 CDS
T07287
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FAZ98_16885 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacs03400
]
FAZ98_16885 (recB)
Enzymes [BR:
pacs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FAZ98_16885 (recB)
DNA repair and recombination proteins [BR:
pacs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FAZ98_16885 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QGZ63461
UniProt:
A0A7Z2GKS1
LinkDB
All DBs
Position
2:complement(581664..585521)
Genome browser
AA seq
1285 aa
AA seq
DB search
MNALDNMDALVLDPLRFPLYGSRLIEASAGTGKTFTIAMLYVRLVLGHGALNADADADDL
PGNAGLFGASRTSGRALTPPEILVVTFTDAATKELRERIRARLIEAAECFRADADDVPFL
APGQDLLHDLREDYPPEQWPACARRLQLAAEWMDEAAVSTIHGWCNRMLSEHAFDSDSLF
SQTLETDQTELRAEVVRDYWRTFMAPLDARCAAEVRDWFASPDALHRSLRGLLAHADLLP
DAREPQAALLDARAQAQAELAALKAPWRVWIDEVEALLNAARAAKQFNGAKLKTNHSEAW
LGKLRDWANTPEMAHPGFDDKAAVWTRLTPAGLQEIWKGEAPAHPAFVAMETLRESLASP
TQAKQEVLCHAARWIARRFEEEEARRSQMGFDDLLTRLLAALKRENGPRLAEIIRKQYPV
ALIDEFQDTDPVQYQIFDSVYRIASNDIDTAIVLIGDPKQAIYAFRGADIYTYLQARRAC
EGRLYTLKKNFRSTRAMVDAVNRCFDAAESRSQGSGAFLFRSADGQENALPFVAADANGR
PETLVAAGQPLGALNIWRLPSATDGKPLSNKAYFAGMAASCATEMVRLLNLGLHGEAGFE
SERGLRALQPADMAVLVNNREEARAIREALALRGVRSVYLSDRDSVYQTPQADELRYWLA
ACAEPDDGRLVRTALASATLGLSWAELDALGRDELAWEARVLQFRGYRECWRKKGVLPML
RRLFNDFHVPQRLLGESASAGLNGERALTNLLHLAELLQQASTQLDGEHALIRYLDEQRE
DESAGGGGDARQLRLESDAGLVQVVTIHKSKGLEYPLVFLPFACAHRAVKPDDMPFKWHD
EAGRLRVTLEADAHVLHQADRERLGEDLRKLYVALTRARYATWIGYAAVSDVEGSAFGYL
LNGGAAIAGEETESLLDALRGPCADIAVSSAPEPARDVLALRDTGVQRGHARTMAYRERE
RWWIASYSSLKTVEASIGEGVPVEVDESRGAPDTRGEDVFLELLDASMPPDEDDGYGSGA
EMRVTPALAPMHGFERGADAGSFLHELMEWAADEGFANIVKADARETVRDMVARRCNVRG
WSHWIDTLTDWLIELASTPLRLPDIDDEPVTPVALQSLESTSYMAEMEFWVTARSVDTLE
LDQLVTAMTLDSEARPALDAAQLNGMLKGFIDLVFEHEGRYYVADYKSNWLGPDDASYTS
AKMRAQILHSRYELQYVLYLFALHRLLKSRLPDYEYERHIGGAVYLFLRGGRSQGQGLHC
ERPPRELIDALDALFAHGDALEKLA
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgctcgataacatggacgcgctggtcctcgatccgctgcggtttccgctgtac
ggcagccggttgatcgaagcgagcgcgggcacgggcaagaccttcacgatcgccatgctc
tatgtgcggctcgtgctcggtcacggcgccttgaatgccgatgccgatgccgatgacctc
cccggcaacgccggtctgttcggtgcatcgcgtacgtctggccgcgcgctcacgccaccc
gaaattctggtcgtgacgttcacggacgccgccaccaaggagctacgcgagcgtattcgc
gcgcgcttgatcgaagccgccgaatgcttccgcgcggatgcggacgacgtgccgtttctc
gctccggggcaggacctgttgcacgacctgcgcgaggactatccgccggagcaatggccc
gcctgtgcgcgccgcttgcaactcgcggccgaatggatggacgaggccgcggtctcgacc
attcacggctggtgcaatcgcatgctcagcgagcatgcgttcgacagtgacagcctgttt
tcgcaaacgctcgaaaccgatcagacggaattgcgcgcggaagtcgtgcgcgattactgg
cgcacgttcatggcgccgctcgacgcgcgatgcgcggccgaagtccgcgactggttcgca
agccccgacgcgctccatcgatcgctgcgcggattgctcgcgcacgcagacctgttacca
gacgcacgcgaaccgcaagcggcgttgctcgacgcgcgcgcgcaagcgcaagccgaactc
gctgcgttgaaggcaccgtggcgcgtgtggatcgacgaggtcgaagcgctgttgaacgct
gcgcgtgccgcgaagcagttcaacggcgcgaagctcaagacgaatcacagcgaagcgtgg
ctcggcaagttgcgcgattgggcgaatacccccgagatggcgcatcccgggttcgacgac
aaggcggccgtctggacgcgcctgacgcccgctggactccaggaaatctggaagggcgag
gcgccggcgcatcccgcgttcgttgcgatggaaacgttgcgcgagtcgctggcctcgccc
acgcaggcgaagcaggaggtgctgtgtcacgcggcgcgctggattgcacgacgtttcgag
gaagaggaggcgcgccgctcgcagatgggcttcgacgatctgctcacgcgtttgctggcc
gcgctgaaacgcgagaacgggccgcgtcttgctgagatcatccgcaagcaatatccggtt
gcgttgatcgacgagttccaggacacagacccggttcagtatcagattttcgattcggtc
taccgtatcgcgtcgaacgacatcgatacggcaatcgtcttgatcggcgatccgaagcag
gcgatctacgcgtttcgcggtgccgacatttatacctatctgcaagcgcggcgtgcgtgc
gaggggcgtctctatacgctgaaaaagaatttccgctccacgcgcgccatggtcgacgcg
gtcaaccgttgcttcgacgcggcagagtcgcggtcccaaggcagcggtgcgtttctgttt
cggagtgccgacggccaggagaatgcgctgccgttcgtcgccgccgacgcgaatggccgt
cccgagacgctggtcgcagcgggccagccgctcggggcgctcaacatctggcgtttgccc
tccgcgacggatggcaagccgctcagcaacaaggcctattttgcggggatggccgcgagt
tgcgcgacggaaatggtgcgtctgctcaacctcggtctgcacggggaggcaggcttcgaa
agcgagcggggcttgcgcgcgctgcaaccggccgacatggccgtgctcgtgaacaatcgc
gaggaagcgcgcgcgattcgcgaggcgctggctttgcgcggcgtgcgcagcgtgtatctt
tccgaccgcgactcggtgtaccaaacgccgcaagcggacgaactgcgctactggctggcc
gcgtgcgcggagcccgacgacggccggctcgtgcgtacggcactggcgagcgcgacgctc
ggcctctcgtgggccgaactcgacgcgttgggccgcgacgaactcgcctgggaagcgcgc
gtgctgcaatttcgcggctatcgcgagtgctggcgcaagaagggcgtgctgcccatgctg
cggcgtctcttcaacgactttcacgtgccgcagcgtttgcttggcgaatccgcgagcgca
ggtctcaatggcgaacgcgcgctgaccaatctcctgcatctcgccgagttgctccagcag
gcgagcacgcaactcgacggcgagcacgcgctgattcgctacctcgacgaacaacgcgag
gacgagagtgcgggcggtggcggcgacgcgcggcaattgcggctcgaaagcgacgcggga
ctcgttcaggtcgtgacgatccataagtcgaaggggctggaatatccactcgtgttcctg
ccgttcgcgtgcgcgcaccgcgcggtgaaacccgacgacatgccgttcaaatggcacgac
gaagcggggcggctccgcgtcacgctcgaagccgatgcgcacgtgctgcatcaggcggac
cgcgaacgcctgggcgaggacttgcgcaagctttatgtggcgctcacgcgcgcgcgctac
gccacgtggatcggttatgcggcggtctcggatgtcgagggcagtgcgttcggatatctg
ctcaacggcggggcggcgattgccggtgaggagaccgaatcattgctcgatgcgttgcgc
ggaccgtgtgccgacatcgccgtctcgtccgcgccggagccggctcgtgatgtgctcgcg
ttgcgcgacacgggcgtgcagcgtggccacgcgcgcacaatggcgtatcgcgaacgcgag
cgttggtggatcgcgagttattcgagtttgaagaccgtcgaagcgtcgataggcgaaggc
gttcccgtcgaagtggacgagtcgcgcggcgcgcccgatacgcgcggcgaagacgtgttc
ctcgaactgctcgacgcgagcatgccgcctgacgaagacgacgggtacggcagcggcgcg
gaaatgcgggtcacgcccgcgctcgcgccgatgcacggtttcgaacgcggcgcggacgcg
ggcagctttctgcacgaactcatggagtgggccgccgacgaaggcttcgcgaacatcgtg
aaagccgacgcgcgcgagacggtgcgcgatatggtcgcgcgccgctgcaatgtgcgcggc
tggtcgcattggatcgacaccctgaccgactggctgatcgaactcgcgagtacgccgctt
cgtctgcccgatatcgacgacgagcccgttacgccggtggcgttgcaatcgctcgaatca
acgtcgtatatggccgaaatggagttctgggtcacggcgcgttcggtcgatacgctcgaa
ctcgatcagctcgtcaccgccatgacactcgatagcgaagcgcgtcccgcactcgacgcc
gcacaactgaacggcatgctcaaaggctttatcgacctcgtgttcgagcacgaaggacgt
tattacgtggccgactacaagtcgaactggctcggccccgacgacgcgtcgtatacgtcc
gcgaaaatgcgcgcgcagattctgcattcacgctatgaactgcaatacgtgctgtatttg
ttcgcgctgcatcgattgctgaaatcgcgcttgccggactacgagtacgagcgccatatc
ggcggcgccgtgtatttgtttttgcgcgggggacgctcgcaagggcaaggcttgcattgc
gagcgaccgccgcgcgaattgatcgacgcgctcgatgcactctttgcccatggcgatgcg
ctggagaagctggcatga
DBGET
integrated database retrieval system
