KEGG   Paraburkholderia acidisoli: FAZ98_35255
Entry
FAZ98_35255       CDS       T07287                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pacs  Paraburkholderia acidisoli
Pathway
pacs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pacs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FAZ98_35255 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pacs03400]
    FAZ98_35255 (ligD)
Enzymes [BR:pacs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FAZ98_35255 (ligD)
DNA repair and recombination proteins [BR:pacs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FAZ98_35255 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QGZ67086
UniProt: A0A7Z2JJS9
LinkDB
Position
p1:180623..183130
AA seq 835 aa
MAPARGPTASSLDRYRKKRDFAVTPEPGPSTAQHAAAPSLAFVVQKHWASRLHYDFRLEL
DGVLMSWAVPKGPCYDPKEKRMAIHVEDHPVDYSGFEGTIPRKQYGAGTVIVWDRGTWAP
VGDPKAGMTAGKLVFRLHGEKLAGIWELVRIAKPGDKQEAWLLFKKRDEWARPLAEYDVI
KALPDSVTAKPLGSVEEREPRVSNSRDEPQAGIDLSLAVDAPLPAKLEPQRATLASTLPS
GDDWITEAKLDGYRMLARVENGRARLFTSSGHDWTKKLATLAAEVEKLRLASGWLDGEIV
MLKEGLPSFGALQEAIGGRGNEAIVYFLFDAPYLNGKDLRSVPLWARRAVLAGLVDEAGE
RIRFSQDFAAPAAQVFEAAASLGLEGLMLKRRDAPYESARTQSWLKAKCRLRQELVICGF
TARGGRDGEIGSLLLGYYERGKLHGAGSVGTGWDACTARELWTRLAPLEVDSKPYDVGEP
KASRWSRRAAGSERWVRPELVAEVEFAEWTTEGVVRQASFKGLRTDKPARRVVREGGEAV
TAAPISKVKVTHPDRVVDRASGVTKIDLVRYYESVAAWILPHLRDRPIAMVRAPTGINGE
LFFQKHAERTGMPGLTAHDRKLWPGHPALLTIDTAEALLAAAQMNAVEFHTWNSTVRRLG
KPDRVVFDLDPGEGVKWGQIQEAAVLVHVLLQELGLEAWLKTSGGKGLHVVVPLAPRLDY
EAVKAFSRAFVRHLAKTIPERFSPTSGPGNRIGKVYVDYLRNGMAQTTVAAFSARARPGM
GVSIPISWDALPDLKGGAQWTVQTAREYLSFQKQDPWAQYWTTGHSLAAAIKRLK
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggctccagcacgcggcccgaccgcatcatctctcgatcgataccggaaaaagcgcgat
ttcgcggtcacgccagaaccgggaccttccacggcgcagcacgccgccgccccaagcctc
gcgtttgtcgtccagaagcattgggccagtcggctgcactacgatttccggctcgaactc
gatggtgtcctgatgtcgtgggccgtaccgaaaggaccttgctatgacccgaaagaaaaa
cgcatggcgattcacgttgaggatcacccggtcgattattcgggcttcgagggcacgatt
cctcgaaagcagtatggcgccggcaccgtgatcgtctgggatcgcggcacgtgggcgccc
gttggcgatccaaaggcgggaatgacggcgggaaaactcgttttccggcttcacggtgaa
aaactcgccgggatttgggaactggttcgcatcgcgaagcccggcgacaagcaggaagcg
tggttgcttttcaagaagcgggacgaatgggcacgcccgcttgccgagtacgacgtcatc
aaggcgctgccagacagcgttaccgcgaagcctctggggtctgtcgaggagagggaacca
cgcgtctccaactcgcgcgatgaaccccaggcgggaatagacctgtcgctcgcggttgat
gctccgcttcccgcaaaactggagccgcagcgcgcaacgctcgcgtcgacgctaccgtca
ggcgatgactggataacggaggcgaagctcgatggataccggatgctcgcgcgtgtcgaa
aatggacgtgcacgtctttttacgagcagtggtcacgactggacgaagaagcttgccacc
cttgccgccgaagtcgaaaagctccggctcgccagcgggtggctcgatggtgaaatcgtg
atgctcaaagaaggcctgcccagtttcggcgcgcttcaggaggcgatcggcggccggggc
aatgaagcaattgtctattttctcttcgacgctccatatctcaacggcaaggatctgaga
agtgtcccgctgtgggcgcgacgggctgtccttgccggactggtagatgaagcgggcgag
aggatccgcttcagccaggatttcgcagcgcctgccgcgcaggtgttcgaggcggcggcc
agccttggcctcgaaggcctgatgctcaagcgccgggatgcaccgtacgagtcggctcgc
acgcagtcgtggctgaaggcgaagtgccggctgcggcaggagctggtcatctgcggcttt
accgcgcgtggggggagggatggggagatcggcagtctgctccttggctactatgagcgt
ggcaagcttcacggcgcgggaagcgtcggcaccggctgggatgcgtgcacggcgcgagag
ctgtggacgcgcctcgcgccgctcgaggtcgattcgaagccttatgacgtgggcgaaccg
aaggcgagccgctggtcacggcgcgcggccggcagcgagcgctgggtgcgcccggaactg
gtcgccgaagtcgagttcgcggaatggacaacggagggcgttgtgcgacaggcgtcgttc
aagggcctgcgtacagacaaaccggcgcgccgcgtcgttcgcgagggcggcgaggcggta
accgcagctccgatctcgaaggtgaaggttactcatccggatcgtgtcgttgaccgggcc
agcggcgtcaccaagattgatctcgttcgctactacgagagcgttgccgcgtggattctg
ccgcatctcagggaccgtcccatagcgatggtacgcgcgcccaccggcatcaatggagaa
ctgtttttccagaaacacgccgaacgcacgggaatgccgggccttaccgcccacgaccga
aaactgtggccggggcatcccgccttgctgaccatcgataccgcggaagccctgctggcg
gcggcgcagatgaatgccgtcgagtttcacacatggaattcgaccgttcgaaggctgggc
aagccggaccgggtcgtttttgatctcgacccgggtgagggggttaaatgggggcaaatt
caggaggccgctgtgcttgtccacgtcctgctacaggaactggggctcgaagcctggctc
aagacgagcggcggcaaggggctgcatgtagtcgtgccgctggcaccccgactggactac
gaagcggtgaaggcgttctcccgtgcatttgtccggcatcttgcgaagacgatccccgag
cgcttttcgccgacttcgggtcccggcaaccgcatcggaaaggtgtatgtcgattacctg
cgcaacggcatggcgcagaccaccgtggcagcgttctccgcgcgagcccggcccggcatg
ggagtttcaataccgatctcgtgggatgctctgccggatctgaaagggggagcgcaatgg
acagtgcagaccgcgcgcgaatatctcagcttccagaaacaggacccgtgggctcaatac
tggacgacaggacactcactggcggccgcgataaagcgcctaaaatga

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