Cutibacterium acnes subsp. defendens ATCC 11828: TIIST44_05430
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Entry
TIIST44_05430 CDS
T01972
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pad
Cutibacterium acnes subsp. defendens ATCC 11828
Brite
KEGG Orthology (KO) [BR:
pad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pad03019
]
TIIST44_05430
Enzymes [BR:
pad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TIIST44_05430
Messenger RNA biogenesis [BR:
pad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TIIST44_05430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_25
AAA_30
ResIII
CON_HrpB
AAA_22
Flavi_DEAD
AAA_11
ParA
Motif
Other DBs
NCBI-ProteinID:
AER05581
LinkDB
All DBs
Position
1181234..1183750
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AA seq
838 aa
AA seq
DB search
MGDRSVTRNCGPDLARVGAGLPVAAYRDEITTALHGGRAVIVAPPGTGKTTFVPPLVASR
CSGRVIVTQPRRVAARAAARRLAALTGTRPGEFASHTVHGESTTTRDTKVEFVTTGVLLR
RLLSDPDLTGVDAVVLDEVHERHLDADLVVAMVCEVAQLRDDLTIVAMSATVDSSGWAAF
LGGVEPAPVVEVASALHELEVEWAPAAGAAVESRGVSREFLGHLGTVTVDALDRHTEGSA
LVFVPGAREVDHVVADLRSRLAGIDVVGLSGAMSAREQDHALSDPGNVRRVIVSTAVAES
SLTVPGVRLVVDSGLSREPRLDRGRGMTGLVTVRESRASAVQRAGRAARLGPGVAVRCLR
AQDWAGMNADPTPEVDHADLVASLLSLAVWGSPRGEGMALPTPLPQDRVAAAEEELRDLG
AVDAEGRITVRGRHLATFPLDPRLARALTDGAAIVGSRRCAEIAAMLGLEDGQVDLVGQW
RQLRSGRHPEAVMWRREADRLARLINDVPPTDITDDDAVATVVSLARPGWIARSRGEGSA
SYLLACGTGVDLPRNCPPGLLGQPWLAVARTSRITSGALIRAAVPLSESAALESGEAMLT
SDTTVTWDGGKVRGRRVLRLGAIELSSTPVRPDPVRARHVALEAVRSGGLDVASLTKNGE
SLRRRLALAHRVFGDPWPDVSDEALLARAEEWLDLDALAAGRGSDATSGLRGLLGWRESA
RLDEVVPETITVPSGSRIRIDYPEPGSDTSPVLAVKLQECFGWADGPTVCDGRVRVVLHL
LSPARRPLAVTDDLASFWASVYPAVRVENRGRYSKHPWPEDPMTATPTKRTNRALRGN
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtgggggaccgctcagtgacgaggaattgtggtccagacctggcgagagttggggctggg
cttccggttgccgcctaccgtgacgagatcaccacggctttacatggtgggcgggccgtc
atcgtggctccaccgggtactggtaagacaacattcgtcccgccgttggtggcctcgagg
tgttctggtcgggttatcgtcacccagcctcgccgggtggcagcgagagccgctgctcgc
cgacttgccgcgctaaccgggacccgccccggggagttcgcgtcgcacaccgtgcacggc
gagtcgacgacaacccgcgacaccaaggtggagttcgttactaccggggtgttgctgcgc
cgtctactcagcgaccccgacctgactggggtggatgctgtcgtcctcgatgaggtccac
gaacggcacctcgacgctgacctcgtcgtggcaatggtgtgcgaagttgctcaattgcgc
gatgatctgaccattgtcgcgatgtcggcgaccgttgatagttccgggtgggcggccttt
ctcggtggtgttgagccggcgccggttgtcgaggtggcctccgctctgcatgaactcgag
gtggagtgggcaccggcagctggtgctgctgtggaatctcggggagtgagtcgcgagttt
ctcggtcatcttggcactgtgaccgttgacgcgcttgatcgccacactgaagggtcggca
cttgtttttgttccgggcgcccgcgaggtcgaccacgtcgtcgcggatttgcgttcccga
ctcgccgggatagatgtggtcgggttgtccggggcgatgtcggcacgtgagcaggatcac
gctctgtcagatccggggaatgtgcgccgcgttatcgtctcgacggctgtcgcagaatct
tccctgacggtgcctggtgtgaggctcgttgttgactccgggttgtcacgcgaaccgaga
ctcgaccgtggtcgaggtatgacgggcttagtgacggtccgggaatcccgcgcctcagca
gtgcagcgcgccggacgcgcagctcgtctgggcccaggggtagccgtgcgctgcctgcgt
gcccaggactgggcgggcatgaatgccgaccctacccccgaggtcgaccacgccgacctt
gtggcgtccctgttgtctttggcggtgtggggatctcctcgtggcgaagggatggcactg
ccaacaccattgccacaggatcgggtagctgcggccgaagaggaactgcgagatctgggt
gctgtcgacgcggaggggcggattacggtgagggggcgtcaccttgccacgtttcccctt
gacccacgtctggcaagggctttgaccgacggtgccgccatcgtcggatcccgccgctgt
gctgagatcgccgccatgcttggcctggaagacggccaggtcgacctcgttgggcaatgg
cgtcaattgcgatcggggcgacacccagaggctgtgatgtggcgccgcgaagctgatcgg
ctggcccggctcatcaacgacgttccccctaccgacatcaccgatgacgatgccgtcgcc
accgtcgtttccctcgctcgcccggggtggattgctcgcagtcgaggggagggttccgcg
tcgtatctactggcctgtggcacgggggttgaccttcctcgcaactgccctccagggctg
ctcgggcaaccgtggctggcggtggcacgtacctcgcgcattactagtggcgccctcatc
cgggccgctgtcccgctctcggagtcggctgctttggagtccggtgaggcgatgctgacg
agcgacacaacggtgacttgggatggcgggaaagtacggggcaggcgggtgttgcgcctc
ggtgcgatcgagttgtcgtcgaccccggtccgcccagatccggtacgggctcgccacgtg
gcgctggaagcggtgaggtctgggggacttgacgtagcgagcctgacgaagaacggtgag
tctttgcgacgccgtcttgcccttgcccatcgggtgtttggcgatccctggcccgatgtc
agcgatgaggctctgctagcccgcgccgaggagtggcttgaccttgacgcgttggcggca
ggacggggaagtgacgcaacttcggggttgcgggggctgctgggctggcgggaatccgct
cgtcttgacgaggtcgtccccgagaccatcaccgtccccagcggatcgcggatccgcatc
gactaccccgagcctggcagtgacacctccccggttcttgcagtcaaacttcaggagtgt
tttggctgggctgacggcccgacggtgtgtgacggcagggtgagggtggtcctccacctg
ctatccccggcgcgacggcccttggccgtcaccgacgatctggcgagtttctgggccagt
gtgtatcccgcggtgagggttgaaaaccgggggcgctactccaaacacccgtggccggag
gaccccatgacagccacacctactaagcgcacgaaccgcgccctgcgggggaactga
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