Paraburkholderia sp. DD10: ACOCG7_19580
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Entry
ACOCG7_19580 CDS
T11777
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
padd Paraburkholderia sp. DD10
Pathway
padd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
padd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOCG7_19580 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
padd03021
]
ACOCG7_19580 (rho)
03019 Messenger RNA biogenesis [BR:
padd03019
]
ACOCG7_19580 (rho)
Transcription machinery [BR:
padd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACOCG7_19580 (rho)
Messenger RNA biogenesis [BR:
padd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACOCG7_19580 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
XQP53628
LinkDB
All DBs
Position
1:complement(910350..911618)
Genome browser
AA seq
422 aa
AA seq
DB search
MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRRGG
GS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtgtccgaattgatcgagatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaaacaggaattgatgtttgccattctaaaa
aaacgagccaaaacgggcgacacgatcttcggcgacggcacgctcgaagtgctgccggac
ggcttcggcttcctgcgttcaccggaaacctcgtatctcgccagcacggacgatatctat
atcagcccgtcgcaaatccgccgcttcaacctgcatacgggcgacacgatcgaaggtgaa
gtgcgcacgccgaaagacggcgagcgctatttcgcgctggtgaaggtggacaaggtcaac
ggccagccgccggaagcctcgaagcacaagatcatgttcgagaacctcacgccgctgcat
ccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccaacgcggcctgctggtagcttcgccg
aagtccggcaagaccgtgatgctgcagcacatcgcgcatgcgatcaaacagaatcatcct
gacgtcgtgctgttcgtgcttttgatcgacgaacgccccgaagaagtgacggaaatgcag
cgttcggtggccggcgaagtgatcgcctccacgttcgacgagcccgccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgaaatgaagaacgacgtg
gtgattctgctcgactcgatcacgcgtctcgcgcgtgcatacaacacggtcgtgccggcc
tcgggcaaggtgctgacaggcggtgtcgacgcgaatgcgctgcagcgtccgaagcgcttc
ttcggcgccgcgcgcaatatcgaggaaggcggctcgctcaccatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgtcttgctgaaaagcgcgtctacccgtcgatcaacctg
aacaagtccggcacgcgccgcgaggaactgctgatcaagcccgaggttctgcaaaagatc
tgggtgctgcgcaagttcattcacgacatggacgaagtcgagtcgatggaattcctgctc
gacaagattcgccagaccaagagcaactccgaattcttcgacatgatgcggcgcggcggc
ggcagctaa
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