Candidatus Pseudomonas adelgestsugas: C3B55_00271
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Entry
C3B55_00271 CDS
T05857
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pade
Candidatus Pseudomonas adelgestsugas
Pathway
pade03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pade00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3B55_00271 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pade03021
]
C3B55_00271 (rpoC)
03400 DNA repair and recombination proteins [BR:
pade03400
]
C3B55_00271 (rpoC)
Enzymes [BR:
pade01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3B55_00271 (rpoC)
Transcription machinery [BR:
pade03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3B55_00271 (rpoC)
DNA repair and recombination proteins [BR:
pade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3B55_00271 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Mis14
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QAX81626
LinkDB
All DBs
Position
484260..488504
Genome browser
AA seq
1414 aa
AA seq
DB search
MRLVWPTFAPLEGKALKDLLNLLKNHSQLEEFDAIRIGLASPEMIRSWSFGEVKKPETIN
YRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKLRGVICEKCGVEVALAKVRRERMAHI
ELASPVAHIWFLKSLPSRIGLLMDMTLRDIERILYFESYVVIDPGMTSLEKGQLLNDEQY
FEALEEFGDDFDARMGAEAIRKLLQSIDLEHEISRLREEIPQTNSETKIKKLSKRLKLME
AFYSSGNLPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
SAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLDDMIKGKQGRFRQNLLGK
RVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEIRGLATTIKAAKKMVEREL
PEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ
MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINVKGEGR
VFAGLQEVDRVFRAGEAALHAKVKVRINETINDSDGGSVTCTRIVDTTVGRALLYQVVPK
GLSYDVVNLPMKKKAISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGISIGVNDFV
IPDKKAQIISAVTDDVKEIERQYVSGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEK
VIDCHGLEVDQESFNSMYMMADSGARGSTAQIRQLAGMRGLMAKPDGSIIETPITANFRE
GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPH
IEGGDVVEPLGERVLGRVIASDVFKPDTKEIIVPAGTLADEKWVEFIELNSIDEVIVRSP
ISCETRYGICAKCYGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTS
AADSVQVKNGGTVRLHNLKHVERVDGNLVAVSRSGELAIADNYGRERERYKLPYGAVISV
KENYKVEAGAIVAKWDPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMINIEVLDVK
DRPASGKDIRPAVKMVDDNCKDLLLPGTDVLAQYFLPANAMVGVADGAKIAIGDVIARIP
QETSKTRDITGGLPRVADLFEARRPKEASILAEISGTIAFGKETKGKRRLVITPNDGSNP
YEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQG
VKINDKHIETILRQMLRKVEITESGDSSFIKGDQMELTYVLVENERLSAEDKFISKFTRV
LLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAY
HSERKRRRDTDKPLRISAKEVEAALTEALSLNGN
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcttgtatggccaacttttgctccgctagaaggaaaggctttgaaagacctactg
aatttgctgaaaaaccatagtcaactcgaagagtttgacgctattcgtattgggttggca
tcgcctgaaatgatccgttcatggtcattcggtgaagtgaagaagccagaaactattaat
taccgtacgtttaaacctgagcgtgacggcctattttgcgctaagatctttggcccggtc
aaagattatgagtgtctatgtggtaagtataagcgcttaaagctccgtggcgtgatttgc
gagaagtgcggcgtggaagtcgcattagctaaagtccgtcgtgagcgcatggcgcatatc
gaactagcttcgccagttgcccacatctggttcctaaaatcattgccatctcgtatcgga
ctactgatggacatgaccctacgtgatatagaacgtattctatactttgagagctatgtt
gttatcgatccaggcatgacttctcttgaaaaaggtcagttattgaacgatgagcagtat
ttcgaagcgttggaagaatttggtgacgattttgatgcccgcatgggcgctgaggctatt
cgcaaactgctgcagtctattgacttagagcacgaaattagccgcctacgcgaagaaatt
ccgcaaacaaactctgaaaccaaaattaagaaactatctaagcgcctaaagctgatggaa
gccttttatagttctggtaacttgccggagtggatggtactaactgttctaccggttttg
cctccagacttacgtccactggtaccgttggatggtggacgttttgcaacgtctgatcta
aatgatctgtaccgtcgtgtgataaaccgtaataatcgcttaaagcgcctacttgatctg
tctgctccggatatcatagttcgtaacgaaaaacgtatgctgcaagaagctgtcgatgct
ttgctcgataatggtcgtcgtggtcgtgctattactggctctaataaacgtccattgaag
tccttggatgatatgattaaaggcaagcaaggtcgtttccgtcaaaacttactcggtaag
cgtgttgactactctggtcgttcagtgattactgtaggcccgactttacgtctacaccag
tgcggtttgcctaaaaaaatggcactcgagctatttaagccgtttatctttggcaagcta
gaaatacgtggtcttgcaaccaccataaaggcagctaaaaaaatggttgagcgcgaactg
ccagaagtttgggacgttctcgctgaagtaattcgcgaacaccctgtcctcctcaaccgc
gcaccaactcttcatcgtttaggtattcaggcgttcgaaccggtactgatcgaaggcaag
gctatccagctgcaccccttagtctgtgctgcgtacaacgctgactttgatggtgatcaa
atggcggtacacgtaccgctaacattagaagctcaattagaagcacgcgcgttgatgatg
tcgactaataacattttgtcgccagccaacggtgagccaatcattgttccttcacaagac
gttgtattgggtttgtactatatgacccgtgaggcaattaatgtgaaaggtgaaggtcgt
gttttcgctggcttgcaagaagttgatcgcgtgtttcgtgctggcgaagctgcattacat
gcgaaagttaaagttcgtattaacgaaactattaatgacagtgacggcggcagtgtcact
tgtactcgtattgttgacaccactgtcggtcgtgcactgctgtatcaagttgtaccaaaa
ggcttgtcgtatgacgttgtcaatttgccaatgaagaaaaaggcgatctctaagcttatt
aaccagtgttaccgtgtggttggtttaaaagagactgtgatattcgctgatcagctaatg
tatactggttttgcctactcaactatttctggcatttctattggtgttaacgattttgta
attcctgataaaaaagcccagattatcagcgccgttactgatgacgtgaaagagattgaa
agacagtatgtctctggcctggtaacccagggtgagaagtacaacaaagtgatcgacctg
tggtctaaggctaacgatgaagtatcaaaagcaatgatggctaatctctcgaaagagaag
gttatcgactgtcatggcttagaggtcgatcaagagtcatttaactcgatgtatatgatg
gctgattctggcgcacgtggttctactgcgcagattcgtcagcttgctggtatgcgtggc
ttgatggctaagcctgacggttctattatcgaaacgccaattactgcgaacttccgtgaa
ggtttaagcgtacttcaatactttatctcaactcacggtgcccgtaaaggtctagcagat
accgcattaaaaactgctaactcaggttacttgacccgtcgtctagtagatgttgcgcaa
gacttagttgttactgaagttgattgcggcactgaacatggcctcttgatgaccccgcat
atcgaaggtggcgatgttgtagaaccgttaggtgagcgtgtgcttggtcgagtcatcgct
agtgatgtatttaagccagatactaaggaaattatcgttcctgcaggaactttagcagat
gagaaatgggttgagttcatcgaacttaacagcatcgatgaagtgattgttcgatcgcca
attagctgcgaaactcgttacggcatttgtgctaagtgctatggtcgtgatttggctcgt
ggtcaccaagtaaatattggtgaagcagtcggcgttatcgccgctcaatctatcggtgag
ccaggaactcagttgactatgcgtacattccatattggtggcgcagcaagccggacttcc
gcagctgatagtgttcaggtaaagaatggaggtactgtacgtctacacaatctgaagcat
gttgaacgggtggatggcaatttagttgctgtgtctcgttccggcgagttggcgattgct
gataattacggtcgtgaacgtgagcgttataaactaccatacggtgctgtgatttcagtt
aaagaaaattataaagttgaagctggcgcaatcgtagctaagtgggatccgcacactcat
ccaatcgttactgaaatgaaaggtactgtaacttacgtaggtatggaagaaggcattaca
ataaagcgtcaaactgacgaattaactggtatgattaacattgaagtgcttgacgtaaaa
gaccgtccggcttctggtaaagatatccgtcctgctgttaaaatggtagatgataactgc
aaggacttgctactgccaggtactgacgtacttgcccagtacttcttgccagctaatgct
atggttggtgtagcggatggtgcaaaaattgcgatcggagatgtaattgcgcgtatcccg
caagaaacttcgaaaacccgtgatatcactggtggcctaccacgtgtcgcggacttgttc
gaagctcgtcgcccgaaagaagcgtctattctggctgaaataagcggtactattgcattt
ggcaaagagactaaaggtaaacgtcgtctggttattactccgaatgacggtagcaatcca
tatgaagagttaattcctaaatggcgtcacctgaacgtctttgaaggcgaacaggtaaac
cgtggcgaagttatttccgatggccctagcgatccacatgacattttgcgtctgttgggt
gtaagtgcgttagcaaagtatatagttaacgagattcaggacgtgtaccgtctgcaagga
gtaaaaataaatgataaacatattgaaactatcttgcgtcagatgctacgtaaagttgaa
attactgaatccggtgactctagtttcattaagggtgaccagatggaactgacttatgtg
ttagtagaaaacgaacgtcttagcgcggaagataaatttatctccaagtttactcgtgtg
ttgcttggtattactaaggcgtctctatctactgagtcatttatttcggcagcttccttc
caggagactactcgcgtacttactgaagcagcagtaactggcaagcgtgactatttgcgc
ggcctaaaagaaaatgtggttgtagggcgtttaattccggcgggtactggtttggcttat
catagtgagcgtaagcgccgacgtgatactgacaagccgctgcgtatcagcgctaaggaa
gtggaagctgcactaaccgaagcgttgagcttaaacggtaactga
DBGET
integrated database retrieval system
