Candidatus Pseudomonas adelgestsugas: C3B55_00679
Help
Entry
C3B55_00679 CDS
T05857
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pade
Candidatus Pseudomonas adelgestsugas
Pathway
pade03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pade00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3B55_00679 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pade03019
]
C3B55_00679 (deaD)
03009 Ribosome biogenesis [BR:
pade03009
]
C3B55_00679 (deaD)
Enzymes [BR:
pade01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3B55_00679 (deaD)
Messenger RNA biogenesis [BR:
pade03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3B55_00679 (deaD)
Ribosome biogenesis [BR:
pade03009
]
Prokaryotic type
rRNA helicases
C3B55_00679 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
QAX82003
UniProt:
A0ABX5R9N5
LinkDB
All DBs
Position
complement(1167490..1169166)
Genome browser
AA seq
558 aa
AA seq
DB search
MTQETSGFAAFNLNQNILAAVAATGYEEPSAIQRQSIPIIMVGQDMIGQAQTGTGKTAAF
ALPILHCINPIKREPQALILAPTRELALQVATSFETYAKQMPGVTVVAVYGGSPMGPQLK
AIRNGAQVVVATPGRLCDHLRRDEKALLTVNHLVLDEADEMLKLGFMDDLEIIFKALPPN
RQTVLFSATLPQSIRAIAERHLRDPRHVKIHTKTQTVTAIKQAYLLVHADQKTSVVLSLL
EVEDFDALIMFVRTKQATLDLASILESKGYKAAALNGDIAQSQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVIPRERRMLQVI
ERVTGQKVTEIRLPDSQAILDARIKKLTNSLSPLVADAESTYGSLLDCLTADINCTLRAM
AAALLRIATNGQALNLDAIEKERRPMAPTNILRSDRLERSSVRLDRCNRERRFPVPLAKG
HVRCRIALGARDGIVAKNLLGAILNDGRLAHDAIGRIQIRDNFSLVELPEDGLEALLTKL
KDTRIAGKQLKLRRYRED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaactagcggctttgccgcttttaatctaaaccagaatattcttgcagct
gttgcagcgacaggctacgaagagccttcggcgattcaacggcaatcgatcccaattatc
atggtcggtcaggacatgattggtcaagcgcaaaccggtacaggtaaaactgctgcgttt
gctttgccaatccttcattgtattaatcctattaagcgtgaaccacaagctttaatccta
gcgccaactcgtgagttagcattacaagtagcaacttcttttgaaacgtatgccaagcaa
atgccaggtgttaccgttgtggccgtttatggcggttcgcctatgggtccacaacttaaa
gcaatccgtaacggtgcgcaggtagttgtcgctactcctggtcgtctgtgcgaccatttg
cgtcgtgatgaaaaagccctattgactgtcaaccacttagttctggatgaagctgatgaa
atgttaaaactaggctttatggatgaccttgaaattatcttcaaggcactgccaccaaat
cgtcagacagtactattttcggctactctgccacagtcgatccgcgctattgctgaacgc
catctgcgcgatccgcgacacgtgaaaattcatactaagactcagacagttacagcgatt
aagcaggcttatctattggttcatgctgaccaaaaaacctcagttgtattgagcttgctg
gaagtggaagactttgatgccttaattatgtttgtgcgcactaagcaagcaactctggat
ctggctagtattctggaatctaaaggctataaagccgctgcgttgaatggtgatattgct
caaagtcaacgtgagcgtgtgattgattctttaaaggatggccgtctagacattgttgta
gcaactgacgttgctgctcgtggcctcgatgttccacgtattactcatgtgttaaacgtt
gatatgccttacgatcctgaatcttacgttcaccgtatcggccgtactggccgtgccggt
cgtgaaggtcgcgcgctactactggtgattccacgtgagcgccgtatgctacaagtgatt
gagcgtgtcaccggtcagaaagttaccgaaatccgtcttcctgattctcaagccattctc
gatgcgcgcatcaagaaactaaccaatagtttatcacccctagtagctgacgctgaatct
acctatggcagtctactggactgcttgactgctgatattaattgtactctacgtgccatg
gctgcagcactgctacgtatagctaccaatggtcaggctttaaacttagatgctatagag
aaagagcgccgcccaatggcgccaaccaatatattgcgcagtgatcgtctagaacgttct
agtgtccgtttagatcgctgcaatcgtgagcgtcgttttccggttccattagctaaaggc
catgttcgttgccgtattgcacttggtgcgcgcgatggtattgtcgccaagaatttatta
ggtgctatacttaatgatggtcgtttagcacatgacgctattggtcgaatccagattcgt
gataatttttctttagttgagctgcctgaagacggcctagaagccttgctgactaagcta
aaagatactcgtattgctggtaagcagttaaagctacgtcgctaccgtgaagattaa
DBGET
integrated database retrieval system
