Candidatus Pseudomonas adelgestsugas: C3B55_00713
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Entry
C3B55_00713 CDS
T05857
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pade
Candidatus Pseudomonas adelgestsugas
Pathway
pade03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pade00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3B55_00713 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pade03400
]
C3B55_00713 (mfd)
Enzymes [BR:
pade01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3B55_00713 (mfd)
DNA repair and recombination proteins [BR:
pade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3B55_00713 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QAX82035
LinkDB
All DBs
Position
1232478..1235927
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLSLPPLSAAIGTQYWSNLPGAALSLAIAEAASTTKRFTLVLTTNSQNAERLRQELSF
FAPDLPMLYFPDWGTLPYDLFSPNKDITSQRIANLYHLPELTYGVLVVQITTALHRLAPT
KFLLGNSLVLNVKQKLDVEKIRAHLEASGYYGVDIVREHGEFAVRGALIDLFPMGSKLPY
RIDLLDDEIKTLRTFDPNNQHTISKVDSIKLLPAWESMLQKDAVIRFKARFCARFNVDCR
HYPLLQDLSSGITPAGIEYYLPLFFDETSTLFNYLPRDTQVFSLPGIKQAAENFWKDVRN
RYEERRVDNSRPVLLPAELFLSVDDCFASLKYLPHVIINQQDVVTGDRRERFPADTLPNL
TIQAKAAQPLEALSKFLGNFSGRILFTAESAGRHEILLELLEHLKLRPKNVDSWLEFVAS
KERLAITITPLDEGLLLDKPSLALIAESLLFGEHMTQRRNYEKRVNAKNNAMIKDLTELR
DGMAVVHIDHGVGRYLGMQILEIDNEVAEFITIEYAESAKLYVPVTSLHLIAPYTGSDGA
LAPLHRLGSETWQKAKHKAAEQIRDVAAELLDIYAHRAACKGHAFADPKVDYATFSAGFA
FEETPDQQITIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHDGKQVAILVPT
TLLAQQHYNSFRDRFAGWPVTIEVMSRFKSFKEANAVIADLAEGKIDIVIGTHKLLSNNI
KIKNLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNITISGMRDLSIIAT
PPARRLAVRSFVIEHNKRTIKEALLRELLRGGQVYYLYNDVKTIEKCAANLVELVPEARI
AIGHGQMLERELEQVMSDFYHKRFNVLVASTIIETGIDVPSASTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYFLTPPRKQITGDAERRLEAIVNTQELGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAIGFTLYMNMLERAVKAIRNGQQLRLDQPMNSGPEINLRLPALIPEDYLP
DVHTRLILYKRIASITDEKSIQDIQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKI
DAGPKGARIEFEAHTPVDPSVLIQLIQDQPNRYKFEGATLFKFIMPMEYAKERFNAIETL
FKQLIPQPD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccagttctaagtctaccgcctctttctgctgcaataggtacacaatactggagcaat
ctacctggtgccgccctaagcttagccattgccgaagctgctagtacaaccaagcgcttt
accctggtgcttactaccaatagccaaaacgctgaacggctcagacaagagctgagtttc
tttgcccctgatttaccgatgctgtattttcccgattggggaacactcccatacgatttg
ttttcgccaaacaaggacatcacctcccaacgcatcgctaacctgtaccacctgccggaa
ctaacctacggcgtgctggtggtgcaaattactacagctctacatcgcctggcgccaact
aaattcctgctaggcaacagcctagtattaaatgtcaaacagaagcttgacgtagaaaag
attcgcgcgcatctagaagccagtggctactatggtgtcgatatagtccgtgaacatggc
gagtttgccgtgcgcggtgcgttgatcgatctcttcccgatgggtagcaaattaccatac
cgcatcgacctgctcgatgatgaaatcaagactttacgtacttttgacccgaataatcag
catactattagtaaagtcgactcaattaagctgctaccagcatgggaatctatgttgcaa
aaagatgcggttatacgctttaaagcacgtttttgtgcacgcttcaacgtggactgccgc
cattacccacttttacaagatttaagtagcggaatcacacctgctggtatcgaatactac
ctaccgctattctttgatgaaacctccactctgttcaactacttacccagagacacccag
gtattttcactccctggtattaagcaggctgcagaaaatttctggaaagatgtgcgtaac
cgctatgaagaacgacgcgtcgacaattcgcgacctgtactgctacctgctgagctgttc
ctgtcggtagacgattgttttgctagtctgaaatacttgccgcacgtgattatcaatcaa
caagacgttgtcactggcgatagacgcgaacgcttccctgctgacacgctgccaaactta
acgattcaggctaaagctgcgcaaccgctggaagctttatctaaattccttggcaacttc
tctggccgcatattatttactgctgaatctgccggtagacatgaaattctgctagagctg
cttgaacaccttaaactacgccctaaaaatgtcgatagctggctagagtttgttgcaagc
aaagagcgtctggcgatcactattacgccattggacgaaggattattgctggataaacca
tccttagcgctaattgctgaaagcctattgttcggcgaacatatgacacagcgtcgtaac
tacgaaaaacgtgttaacgccaagaacaatgcaatgatcaaagatcttaccgagttacgt
gatggcatggcagtggtgcatatcgatcatggtgtaggccgctatctaggtatgcagatt
ttagaaatcgacaacgaagttgctgaattcattaccatagaatatgcagagagcgccaaa
ctctatgtgcctgtgacgagcttacacctaattgccccttatactggtagcgatggagcc
ttagctccgttacatcgcctaggttccgagacatggcaaaaagccaaacacaaagctgcc
gaacagatacgagacgttgccgcagaattgcttgatatctatgcccaccgtgcagcatgt
aaaggacatgcttttgctgacccaaaagtcgactacgcaactttcagcgctggttttgct
ttcgaagaaactccagaccagcaaattactatagaagctgtacgcgccgacatgctagct
cccaaaccaatggatcgcctagtgtgcggtgacgtaggcttcggtaaaactgaggtagct
atgcgtgcagcctttattgccgttcacgacggcaagcaggtggctattctagtaccgact
actttacttgcccaacagcactataatagcttccgcgatcgttttgctggctggccggtg
acaatagaagtaatgagtcgttttaaatctttcaaggaagctaacgctgtaatcgctgat
ctagccgaaggtaagatcgacatagtaatcggcactcacaagttgctatcaaacaatatt
aagattaagaatcttggtttagtagtcatcgacgaagagcaccgctttggtgtacgtcag
aaagaacagcttaaggcgcttcgtagcgaagtagacatccttaccctgactgccacacca
attccgcgcacgcttaacataacaatatctggcatgcgcgacttatcgatcatcgctacg
ccaccagcacgacgtttagcagtgcgctcattcgtaatagagcataacaaacgtacaatc
aaagaggcactgttgcgtgaattgctacgcggtggacaggtgtactatttgtacaacgat
gtaaaaaccatagagaaatgcgctgctaatctcgttgagctagtaccagaagcgcgtatt
gccatcggccacggacagatgctagaacgcgaactcgaacaggtaatgagcgacttctac
cacaagcgctttaatgtattggttgcgtcaactattatcgaaaccggtatcgatgtacca
agtgccagcacgattatcatcgagcgcgccgacaaattcggcctagcacaattacaccaa
ttacgcggccgggtagggcgtagtcatcaccaagcatatgcctactttctgacgccaccg
cgcaaacagatcacgggtgacgctgaaagacgtttagaagccatagttaatacccaagaa
ctaggtgctggttttgtgttggcgaccaacgacctggaaatacgtggtgctggtgaacta
ctgggcgatggtcagagtggacaaattcaggctataggatttactctttatatgaatatg
cttgaaagagcagtaaaagctatccgcaatggccaacaactgcgccttgatcaacccatg
aacagtggcccagaaataaacctacgcttgccagcattgattccagaagattatttacca
gacgtgcacacacgactgattctatacaaacgcatcgcctcaataactgatgaaaaaagt
atacaggatatacaggtagagatgattgaccgttttggacttttaccggaaccaaccaag
aacctggtacgcctgacattgctaaaattacaagctgagcagttgggtatcaagaaaatt
gatgctggtcctaagggagcgcgtatagaattcgaagcgcacacaccagtagacccatca
gtgctgattcagctgattcaagatcaacctaaccgctataagtttgaaggtgctacgcta
tttaaatttatcatgccgatggaatatgctaaagaacgctttaatgctatagaaactctt
tttaagcaactcatcccacaacctgattaa
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