Pygoscelis adeliae (Adelie penguin): 103913876
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Entry
103913876 CDS
T06012
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
padl
Pygoscelis adeliae (Adelie penguin)
Pathway
padl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
padl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103913876 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
padl03041
]
103913876 (DDX42)
Enzymes [BR:
padl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103913876 (DDX42)
Spliceosome [BR:
padl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103913876 (DDX42)
Complex B
103913876 (DDX42)
Complex C
U2 SnRNP specific factors
103913876 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
103913876
NCBI-ProteinID:
XP_009318712
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRHLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNNTNASTNNREGGGGSTGVAAGGGGGGIVRERYNDNRNSRHNEVPRRGEGG
GRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHGESRHFADVGSGNRNNGDSRNSNEGRN
NENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtgggtttgcc
ataacacctggaaagaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcagggcctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaacgcgtattttgaggatgaagag
gaagattccagcaatgtcgaattgccatacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccgtttgagaaaaacttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccgaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcaaattaggaaatccgagtatacccagcccactcctatacag
tgtcagggtgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccaatgttgattcacatcatggatcaaaaagag
cttgaaccaggggatggtcccattgcagtgatcgtatgcccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataacctgcgctccgtagctgta
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgctagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggctcgagatattctgattgatccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcgacacctcgtggagttcacgtcctctgggagc
gttctcctgtttgtcaccaagaaggcaaatgcagaagagctggccaataaccttaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaattcaagaaaaaggggatcccgatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtgatcaattatgatgtggctcgggacatagat
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgcgggtgatcttgtcagaaatctggaaggcgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccatggttccggaag
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaaattctgaccgtggaaacaacaacagcgtgatg
agtaactatgaggcatacaagccatccactggggcaatgggagacagacttacggcaatg
aaagcagcttttcagtcccagtataagagccacttcgttgctgcaagcttaaataatcaa
aagactggtagctctgctgctggtgctagtggctggaccagcgctgggagcttgaactca
gtaccgacgagttcagcgcagcaaaatgccgcaaatcctgacagcccaattgcagccgcc
gcagcagcaaagggtgttccaggtttcaccagcacggggaatttgagtagcgttcccacc
tttccaagtgtcggcgtacagggcttcaacaacacaaacgccagcaccaacaatcgagaa
ggcggcggcggcagcaccggcgttgctgcaggcggcggtggtggcggcattgtcagagaa
cgatacaacgacaaccggaacagtcgccacaatgaggtcccgcgccgtggagagggtggt
ggtcgctacaatgatgtgcaacgccatggagaaggaggcggtcgccacagtgacgcttac
cgccacggagagggccgacatggcgacaaccatcgccacggtgaaagccggcacttcgct
gatgtgggcagtggcaatcgcaataatggtgatagcaggaatagcaacgaaggtaggaac
aacgagaacaggaatggtgagaacaggaaggatgccaacagccgagacaacaagacagat
ggttttgctgtcccagagcccccaaaacgtaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
