Pygoscelis adeliae (Adelie penguin): 103917881
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Entry
103917881 CDS
T06012
Symbol
XRN1
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
padl
Pygoscelis adeliae (Adelie penguin)
Pathway
padl03008
Ribosome biogenesis in eukaryotes
padl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
padl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103917881 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
103917881 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
padl03019
]
103917881 (XRN1)
03009 Ribosome biogenesis [BR:
padl03009
]
103917881 (XRN1)
03016 Transfer RNA biogenesis [BR:
padl03016
]
103917881 (XRN1)
03036 Chromosome and associated proteins [BR:
padl03036
]
103917881 (XRN1)
Messenger RNA biogenesis [BR:
padl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103917881 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
103917881 (XRN1)
Ribosome biogenesis [BR:
padl03009
]
Eukaryotic type
Pre-60S particles
RNases
103917881 (XRN1)
Transfer RNA biogenesis [BR:
padl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103917881 (XRN1)
Chromosome and associated proteins [BR:
padl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103917881 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
103917881
NCBI-ProteinID:
XP_009323368
LinkDB
All DBs
Position
Unknown
AA seq
1734 aa
AA seq
DB search
MNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMN
QQRGRRFRSAKEAEDKIKKALEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKT
STDKSWQGVTVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLT
SHEAHFALLREEVRFGGKKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDI
ERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKR
FEKYLTRLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENS
ICLAALEKNEGEVVTPKTVLEDEPEDDDLFETEFRQYKRTYYMTKMGVEVVSDDFLADQA
ECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDICNIGELKIKFELGKPFMPFEQLLA
VLPAASKDLLPKCYQHLMISQDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQ
AMESCNKCLKEEEKRRNTHSACLMYWYDKDAEFQYMSPWPEKFPAVERCHTRYKTIPLDA
WHVEITHNKITKINKSALYFCGFPTLKHIKHKFYLRKSGVQVFQQSSHGENMMLEIIADE
NSKEQMVENVASLVLGKRVFVNWPHLEEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPP
TKVAYVGDKEQSMWLKEVQGISEHYQRRKGIIIHETSIVVYAQLLTGNRYQLNQNGEVYL
EKQWSKQVLPFVYQTVVKDIKAFDSRFSNIKTLDDLFPPGSTAFMLGSPYYGXFVQDSRD
VITEGRIRVVFNIPCEPQLDPLIQNQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIG
RGSKKNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELF
NYIAKNSQEDIFYEDDIWPGEDENGAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVE
KIEEEIEKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVVPDRDAEYRLFDRVVNVRENFSV
PVGLRGTIIGIKGASRETDVLFEVLFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRS
EMGNQKLTAIVKPQPAVNNYNSYPSDLSSVCSQKVHLGGLNHSPRSLFVPTQQLNGRQHY
NLRAENQGNSNSPQKGSFLSGNQKNKAQSKQDDEFCSIWQSLQSSGKSHHIQQTMHEKGA
VLPQEIKLGTGNQFYKPGFNDSSFKGQQRKQEPYKKFKEDSKVTRGESQPHNKISSKQNF
AGVNKYNVKLLKRNESPNMPVIQKAAVDGPCTGGKDNELESLLASLKISKENEVQTYSKE
ARATNEEHLSPQSFAMKGTQMLKEILKIDGSDLETRNEVKSQVNDVPAPPSRQDCHGAAL
QYRQTKKMAAYMNRPHSAGGPQNTPALETGGHPFACPQPALSTVSELSRICSLVGMSQPD
FSFLKTPQTMTVCHIKLSNGLLVHGPQCHSEAEAKEKAALFALQRLSSIGVNFPLPPPPP
PPVFPNYQPLGVPVPPGSIPPVFAQPPANIMPPSSHMFGPVSWGTPVPKHYYPGSYPGNV
SLAGTIPVGSHNQFIPLQVTKKRAASKKNFELKEFQSSPRAAPLKNEQPVSSDHIQQDSS
SAPLKSPQAAQSTVSFQDNVATPSVPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcattatacatcagtgttcacatccgaatgatgacgatgttcacttcagaatc
tcagaagacaagatttttgccgatatttttcactatttggaagtactatttcgcattatt
aaaccgaggaaggttttcttcatggcagttgatggagtagctccaagagcaaaaatgaat
cagcagcgtgggagacgttttagatcagcaaaagaggcagaggacaaaataaaaaaggca
ttagaaaagggagaaactctccctacagaagccagatttgactccaactgtattacacca
ggaactgaattcatggccagattgcatgagcatcttaaatattttgtaaatatgaagact
tccacagacaaatcgtggcaaggagtaacagtctacttatcaggccatgagactccgggg
gaaggtgagcataaaattatggagttcatcagatcagaaaaagcaaagccccatcacgat
ccaaacacaagacactgtctctatggcttagatgctgacttgattatgctgggattaaca
agtcatgaggcacactttgcgctcttaagagaagaagtcagatttggtggtaaaaaatct
caaagagcatgtgcaccagaggaaaccacgtttcatttactgcacttatcactgatgaga
gaatatattgattatgaattttcaccagtaaaagacaagatttcctttgaatatgatatt
gaaaggataatagatgattggatcttgatgggtttccttgtaggaaatgattttattcct
catctacctcatttacacattaatcatgatgcactgccgctactttatagaacatatatg
gctatcttgccagaactgggaggttacataaatgaaaacgggcatctgaatttaaaacgc
tttgagaaatatctcacaagattgtcagattttgaccgtgaacacttcagtgaagtcttt
gtagacctaaaatggtttgaaagtaaagtaggcaataaatacctcaacgaggcagctggt
attgcagcagaggaagccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattct
atatgtttggctgctttagaaaaaaacgaaggtgaagttgtgacccctaaaactgtgttg
gaagatgaaccagaagatgatgatctgtttgaaactgagtttaggcaatacaaaagaact
tactacatgactaaaatgggtgtagaagtagtttctgatgacttcttggctgatcaagct
gaatgttatgtccaggcaatacaatggattttgcattattattaccatggagttcagtca
tggagctggtattatccttatcattatgcaccttatctgtcagatatttgcaacatcggt
gaactcaaaatcaaatttgaactgggaaaacctttcatgccatttgaacagcttcttgct
gtacttccagcagctagcaaagatctgctacctaaatgctaccagcatttgatgatcagt
caagactctcctattatcgaatattatccaccagattttaaaaccgacctaaatggaaaa
cagcaagaatgggaagctgtagtattaatcccgtttattgatgagaaacgactgctgcag
gccatggaatcctgtaataagtgcctgaaagaagaagagaaacgaagaaatactcacagt
gcttgtttaatgtactggtatgacaaagatgcagagttccagtacatgtcaccatggcca
gagaaattccctgcagtagaaagatgtcatacgaggtataaaacaatacctttggatgct
tggcacgtagaaataacgcacaataagataactaaaatcaacaagagtgcattatatttt
tgtggatttcctactttaaagcacattaaacataagttttatcttagaaaaagtggcgta
caggtgtttcagcaaagcagccatggagagaacatgatgttagaaatcatagctgatgag
aactcaaaagaacagatggtagaaaatgttgccagtttggtacttggaaagcgtgttttt
gttaactggccgcaccttgaagaagccagagttgttgctgtgtcagatggagaaactaag
ttttatttggaagaaccacatggcacacagaagctttacatgggaaatgcagtgccccca
actaaagtggcatatgttggagacaaggagcaaagcatgtggttaaaagaagttcaaggc
atttcagagcactaccagagaagaaaaggaataattattcatgaaacatcaatagttgta
tatgctcagttactcactggtaataggtatcaactaaaccaaaatggagaagtttatttg
gagaagcagtggtcaaaacaagttcttccttttgtttaccaaactgttgtcaaggatatc
aaagcctttgactctcgtttttcaaacatcaaaactttggatgacttgtttcctcctgga
agtacagcctttatgctgggatctccttactatggctaatttgttcaagattcacgtgac
gtgatcacagaaggtagaattcgtgtagttttcaatattccgtgtgaaccccagcttgat
cctttaatacagaaccagcataaatattctgtgaaatacaatcctgcatatattttggcc
agccgtcttggagtaagtggatatcttgtctccagatttacagggagtatctttattgga
agaggatcaaagaaaaatcctcatggagatcacaaagcaaatgtggggctaaacctgaag
ttcaataagaaaaatgaagaagttcctggctacactaagaaggttggaaacgaatggatg
tattcttctgcagtagaacaactacttgctgagtatttagaaagggtccctgaactattt
aattatatagccaagaatagccaggaagatatcttctatgaagatgacatttggcctgga
gaggatgagaatggagctgagaaagttcaagaaattgttgcctggttaaaggcacatcct
gtgtctgctttgtctcgctcatcttgtgacttgcaaattttggatgcagccattgttgag
aaaattgaagaagaaatagagaaatgcaagcagagaaagagcaacaagaaggtgcgagta
actgtgaaaccccatttgctgtacagaccattagaacaacagaacggggttgttcccgac
cgagatgcagagtataggctgtttgaccgtgttgtcaatgtgagagagaacttttccgtt
ccagttggtcttcgaggtaccattataggaattaaaggagccagtagagaaacagatgtg
ctcttcgaagttttgtttgatgaagaattccttggaggcctaactataaggtgctcacct
gccagaggttatcgtctgccatcaagtgccttaattaacctgtctcatggtagtcggtca
gaaatgggaaatcaaaaactgacggccatagttaaacctcagccagctgtgaataactac
aattcatatccatctgatctgtcatctgtatgctcgcaaaaggtgcatctgggaggcctc
aaccattctcctcgctctctctttgttcctactcaacaactgaatggaagacagcattac
aatctcagggctgaaaatcagggcaactctaactcaccccagaaaggatcatttctgagt
ggcaatcagaaaaataaagcacagagtaagcaagatgatgaattttgcagcatatggcaa
tcattgcagagttctggcaagtctcaccacattcagcaaaccatgcatgagaagggtgca
gttctacctcaggaaatcaagctgggaactggcaatcagttctataagccaggattcaat
gacagcagctttaaaggtcagcaaagaaaacaggagccatataaaaaatttaaagaagat
tccaaagttacaagaggtgaaagtcagccacataataaaatatcaagcaaacagaatttt
gcaggtgtgaataagtacaatgtcaaacttttgaagaggaatgaaagtcccaacatgcct
gtcattcagaaggctgcagttgatggtccctgtacaggtggaaaggacaatgaacttgaa
agcctcctagcttctttgaaaatttccaaagaaaatgaagtgcagacttattccaaggaa
gcaagagctacaaatgaagaacatctgtcaccacaatcatttgctatgaaaggaacacag
atgctcaaagagattttgaagatagatggctctgacctggaaacaaggaatgaagtgaag
tcccaagttaatgatgttcctgctccccctagtagacaggattgccatggagccgccttg
caatatagacaaacaaaaaaaatggctgcttatatgaacaggcctcatagcgctggaggc
cctcagaacacaccagcactggaaactggaggtcaccccttcgcttgtccacagcctgca
ctgtctactgtttctgaactttctcgtatttgttctcttgttggaatgtcgcaaccagat
ttctctttcctaaaaacaccacagaccatgacggtttgtcacataaaattatcaaatggt
ttgttggttcatggaccgcagtgtcattctgaagctgaagcaaaggagaaagctgcgctt
tttgctttacagcgtttgagttctataggagtaaacttccctttgcctccacctccgcct
ccaccagtgttcccaaattatcaaccactgggagttcctgtaccacctggatctattcct
ccagtatttgcacaaccccctgctaacataatgcctccatcgtctcacatgtttggtcca
gtgtcctggggaactccagtgcctaaacattattatcctggctcctatccaggaaatgtg
tctcttgcaggaactataccagttggttctcacaaccagtttatacctctgcaggtaact
aaaaaaagggctgctagcaagaaaaactttgagctcaaggagtttcagagttcccctcga
gctgcaccactaaagaatgaacagccagtgtcttctgaccacattcagcaagatagttct
tcagctcctttaaaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtg
gctactccaagcgttcctcataacaaatcaacaccaaacacttccagcaagcgaaagcca
agaaagctggctgtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
