Pygoscelis adeliae (Adelie penguin): 103919429
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Entry
103919429 CDS
T06012
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
padl
Pygoscelis adeliae (Adelie penguin)
Pathway
padl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
padl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103919429 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
padl03019
]
103919429 (SKIV2L2)
03041 Spliceosome [BR:
padl03041
]
103919429 (SKIV2L2)
03009 Ribosome biogenesis [BR:
padl03009
]
103919429 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
padl03016
]
103919429 (SKIV2L2)
Enzymes [BR:
padl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103919429 (SKIV2L2)
Messenger RNA biogenesis [BR:
padl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103919429 (SKIV2L2)
Spliceosome [BR:
padl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103919429 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
103919429 (SKIV2L2)
Ribosome biogenesis [BR:
padl03009
]
Eukaryotic type
Pre-60S particles
Helicases
103919429 (SKIV2L2)
Transfer RNA biogenesis [BR:
padl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103919429 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103919429
NCBI-ProteinID:
XP_009325208
UniProt:
A0A093NYC6
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAASGAKKSKGGATEGARRPGKRSEEKSSVAPTGKPKREVEV
DSTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggacgagctcttcagcgtgtttgaggaggactcggccgccgcc
gcctccggcgccaagaagagcaaagggggcgccaccgagggcgccaggagaccgggaaaa
cgttcggaggaaaaatcttcagtagctccgacagggaagcccaaaagggaagttgaggtt
gatagtaccgaagatgccgttttgggaaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggtctgaagccaaga
actggaaaagctgcaaaggaatatccatttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcggctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttacg
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
accgagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcatgg
gttatttttgatgaaattcactacatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattacgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgtcatcttcacaaacagccttgccatgtgatttac
accgactaccgacctactccactgcagcattatatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagacaattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggaccagaaaggcaggaaaggaggaaca
aaaggtccttcaaatgtttttaagattgtgaaaatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcatggtggtctgcttcctatcttgaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagacatttgctatggga
attaatatgccagccaggactgtgctatttacaagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacgtacaac
atggtattgaacttgcttcgagtagaggaaataaaccctgaatacatgttagaaaaatcc
ttctaccagttccaacattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagctagcaaaactgggtaaagagattgaagaatatgtccacaaaccaaag
tattgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaattggacccattatatgtagttgaagtgctactgcactgcagcaaagagagtttgaaa
aattctgctactgaggctgcaaagccagccaggcctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccaaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaaa
cgatttcctgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagtaatccaaaaagttgaggcatttgagcataggatgtattcacatcct
cttcacaatgatcccaacttggaaaccgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagcagcaaagcgagaactgaaaaaagccagaactgtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagat
gttattgagatgaaaggacgggtcgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtcttttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagcagttg
gcaggaccgcttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaattgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtctatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgtatgagaaggctagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgttcgctgcaagcctttacctgtaa
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