Pygoscelis adeliae (Adelie penguin): 103923000
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Entry
103923000 CDS
T06012
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
padl
Pygoscelis adeliae (Adelie penguin)
Pathway
padl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
padl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103923000 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
padl03032
]
103923000 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
padl03400
]
103923000 (TOPBP1)
DNA replication proteins [BR:
padl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
103923000 (TOPBP1)
DNA repair and recombination proteins [BR:
padl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103923000 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
103923000
NCBI-ProteinID:
XP_009329512
LinkDB
All DBs
Position
Unknown
AA seq
1521 aa
AA seq
DB search
MKGSKEPFFVKFIKSSGNSEYFFKALESIKEFQTEEHLQILEEETALNIKENDKSLYICD
PFRGIVFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKTLWDRSQQ
SIMRYTDVNMEDYACPVFLGCIICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIERGFCQDETIYKIEAGSEPSNTPSTSTPTNH
ASKSDNHILSDVSHISSINLSGVNETACSSAMSSRLDPLPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDELKHFLDKTAHRPHV
VTAKWLLESFSKGYLHPVEQYIPLNYQLLENPILERPGMKSILPKNNSLLKKEAVNVVKH
QKAAEDDFLSLYVNNDSTLDEVEKLTSRTFNNVTHLTVQGENQSSVYNGSLGESSALVEG
GLFVRKRFLLFGFGEEDESCIADIIKENAGKILPLQSRTIADYAVVPLLGCTVKLTVGDV
VTNTWLITCVEQQLLLDPQSNPLFTPVPVMEGVTPLEDCVLSFSQFTGAERDSLVYLAGL
LGARVQEFFVRKANAKKGMFASTHLVVREPDGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDKESSITQLSKTPATVKSPDSEQPTYLLEAGKKTAVTPLDINRFQS
KAFQAVISHHIGKKTTPLAQGGLPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALET
PVGPDQKTRKLSTPLSEVISRNLKLALENSTRHTVALTASPQFTTAQPEVEEEPKPLADV
VICVSKKLSKKQSELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHI
VSEHWLLESAQEYKWLPESLFPHTYNPKMSLDISAVQDVRLSSSKLPSTAKPVEENEIIP
VDEDDAEDDVTTDQIKEMVTTGEEQIVTSESKGGEFLTQALEMRENFQRQLQEIMSATSL
VKPQGQRGSLSRNSFDGSPTTPDSTRSVRNGRSRVLEALRQSRQALTDINTEPSQSEQII
WDDPTAREERARLVSNFQWPNSPSQYTEQGQSNVYKNMDESAFKGSLADAEIAGIAVPEA
GDGDLIEDLKNPVCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTEDEKADE
EPEKHRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASM
AAGKWVLHRSYLEACRGAGCFVQEEDYEWGSNSILNVLPGINVNQKKLALAAMRWRKKIH
KGRQETGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSMSLFKEATHLFADF
SKLKPDDTRVNIAEAAAQGVNCLKPEYIADYLIQDPPPPVESYCLPEAESYLQNNTELGT
GVSQKRKALGEMSRVKRSRIH
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagtaaggaaccattttttgtgaaattcataaagtcttctgggaactcggag
tatttttttaaagctcttgagtctataaaagaatttcagacagaagaacatctccagatc
cttgaagaagaaacagcgctcaatataaaagaaaatgataaatcactctacatttgtgat
ccttttagaggcattgttttcaatcatctcaaaaagcttggttgtagaattgttggacca
caggtagtcctgtactgtatgcagtcccagcgatgtgtcccaagagctgagtatcctgtg
tacaatatgaccatggccgatgtaacagtatcctgtaccagccttgaaaaagatgttagg
gaagaagttcataaatatgtgcagatgatgggtggacgtgtgtacagagacctcaatgta
tcagtaactcatcttatagctggagaagttggcagcaagaagtacttagtagctgcttct
ctgaaaaaacctattttgcttccttcttgggttaagacactgtgggatagatctcagcaa
agcataatgagatacactgatgttaacatggaagactacgcttgtcctgtgttccttggc
tgtataatttgtgtaactggcttaagtagttcagacaggaaagaagtccagcgcctgact
gctgaacatggtgggcaatatacagggcagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaaatggaacgtgcactgtgtg
tctgtgcagtggttttctgacagcattgagagaggcttctgtcaggatgagacaatatat
aaaatagaagctggatcagaaccgagtaatacacccagtacgtcaacacctacaaatcat
gccagcaagtccgataatcatatcctttcggacgtcagccacatttccagtatcaatttg
agtggtgttaatgaaactgcatgtagttctgctatgagcagcagactggatcctcttcct
gatgagctggaaaacttggatataagttcttttcaagcccctgaagatttgttagatggg
tgtcgaatctatctgtgtggcttcagtggcaggaagttggacaagatgaggcggcttatt
aattgcggtggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcattttg
ggggaaaataacgatgagttgaaacacttcttggacaagacagctcacaggcctcacgta
gtgacagcaaaatggttgctggagtcatttagtaaaggttacctacatccagtggagcaa
tatatccctttaaactaccagctgttagagaacccaattttggagcgacctggaatgaag
tcaattcttcccaaaaataacagtctcttgaagaaagaagctgtgaacgttgtaaagcac
cagaaagctgctgaagatgacttcctctctctatatgtaaataatgattctacattagat
gaagttgaaaaactaacatccagaaccttcaataatgttactcacttgaccgttcaagga
gagaatcaatcttctgtctataatggttctttgggagagtcttctgcactggttgaagga
ggcttatttgtcagaaagagatttcttcttttcggttttggtgaagaggacgagtcctgc
attgcagatattataaaggagaatgctgggaaaattctgccgctgcaaagcagaaccatt
gcagactatgctgtggtacctttattggggtgcacagtgaagctgactgttggtgatgtt
gtcacaaatacgtggctgataacatgtgtggaacagcagctccttttagatccccagtcc
aatccacttttcacaccagtcccggtaatggaaggagttacccctctggaagattgtgtt
ctttcttttagccagttcactggtgcagagagagactcactggtttatctggcaggactc
ctaggagcaagagtccaagaattctttgtgcggaaagccaatgcaaaaaagggaatgttt
gccagtacccatcttgtagtgagagaaccggatggttcgaagtatgaagctgcgaagaag
tggaatttgccggcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagaga
gcagatgaaagcaagttcttggttgaaaatgcagaggctgaagataaggagagttctatt
actcagcttagcaagacaccagcaactgttaaatctcctgattcggaacaacctacttac
ctccttgaagctgggaaaaaaacagctgtgacccctcttgatatcaacaggttccagagt
aaagctttccaagctgtgatctctcatcatattgggaagaagacaacccctcttgcacaa
ggggggctgccacagaaagaaccatctttacatcttgatacaccatcaaaatttctttcc
aaagacaagttattcaagccttcttttgatgtaaaggatgctctggcagctttggaaact
cctgtgggtcctgaccaaaaaaccaggaaactgagcacacctctctctgaagtcatcagc
agaaacttgaaattggcactggagaacagcacaaggcatacagtagctcttactgccagc
cctcagtttaccactgcacagccagaagtggaagaagagcccaagcctctagctgatgtt
gttatatgtgttagtaaaaaacttagtaagaagcaaagtgaactgaatgcagtagcagct
tctcttggggcagactacagatggtgctttgatgaaacagtaacacacttcatctacaag
ggaggacaaaatgacaataataaggagtacaaatccgttaaagaacggggtatacatatt
gtttcagaacactggcttttagagagtgcccaagaatataaatggcttcctgagtctctc
tttcctcacacttacaatcccaaaatgagcctggacatcagtgcagtgcaagatgtcagg
ctctcctccagtaaacttccatcaactgcaaaaccagtagaggaaaatgagattattcca
gtggacgaagatgatgctgaagatgatgtaactactgatcaaataaaggaaatggtcact
acaggggaagaacaaattgtaacaagtgaatccaaaggaggtgaatttttaacccaagca
ctagaaatgagggagaactttcaaaggcagctgcaggagatcatgtctgccacatcacta
gtgaaaccacaagggcaaagaggttccctttcaaggaacagttttgatggttctccaacc
actcctgatagcacacggtctgtgcgaaatggccgcagtagggtcttggaagctctaagg
caatcccgtcaggcactcacagatataaatacagagccatcccagagtgagcagatcatc
tgggacgatcctactgcgagggaggagagagcaagacttgtcagcaactttcagtggcct
aacagtccttcccagtacactgagcaaggtcagagtaacgtctataagaacatggatgag
tctgccttcaaaggatctttagctgatgcagagattgctggtatagctgttcctgaggct
ggggatggagatttgattgaagatctaaaaaatcctgtatgtagagatcctgaaacaccg
attaaagatcacttgatccccactccgcaggcccccagcattgctttcccactagctaac
cctcctgtggcaccacagcccaaagaaaaggctgttacagaagatgagaaggctgatgaa
gaaccagaaaaacaccgtaaatttcagctgtcttctcttaatcctcaagaaagatttgat
tactgccatctgattgaggaattaggtggaatagtacttgagaaacagtgctttgatcca
agttgcacacacattgttgtgggacatcctcttcgaaatgaaaaattcttggcttcgatg
gcagctggaaagtgggtgcttcatcgttcctacctggaggcatgtagaggagctggctgc
tttgttcaggaagaagattacgagtggggaagtaattccatacttaacgttttgcctgga
atcaatgtaaaccagaagaaactagcactcgcagccatgaggtggaggaaaaaaattcat
aaagggaggcaagaaactggtattgttgagggagctttcagtggctggaaagtgatcctg
aacgttgaccaaaccaaggaagcaggattcagacgccttcttcagtcaggaggagcaaaa
gtgttttctggtcattctatgtctctctttaaagaagcaactcatctctttgctgacttc
agtaagctgaagccggatgacaccagggttaacatagcagaagcggcagcccagggagtg
aactgcttgaaaccagagtacattgctgactacctcatccaggacccacctcccccagtg
gagtcttactgcctgccggaagctgagtcttaccttcagaataacacagaacttggaact
ggagtatcccagaaaagaaaagcgctgggagaaatgagcagagtcaagcgatccagaata
cactga
DBGET
integrated database retrieval system
