Pyxicephalus adspersus (African bullfrog): 140322596
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Entry
140322596 CDS
T11284
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140322596 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pads03041
]
140322596 (SNRNP200)
Enzymes [BR:
pads01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140322596 (SNRNP200)
Spliceosome [BR:
pads03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140322596 (SNRNP200)
Complex C
U5 SnRNP specific factors
140322596 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
AAA_22
AAA_30
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
140322596
NCBI-ProteinID:
XP_072255248
LinkDB
All DBs
Position
2:complement(157851234..157879748)
Genome browser
AA seq
1936 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLDGTRMGDKAQKTK
PQMQEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDRLRDKERRREIEQLLGQTDDTRYHVLVNLGKKIS
DYGGDKEIQNMDDNIDETYGVNVQFESDEEVGDEDVYGEVRDEASDDDMDGDEAVVHGTL
SANLVSSGELMSTKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKILRQHRMMILYCTLLASAQSEAEKERIMNKMEADSELSKYL
YQLQETEKEDLIREERTRRERVRQSRVDTDLESMEMEQDNFTPRQVLDLEDLAFAQGSHF
MANKRCQLPDGSFRRQRKGYEEVHVPALKQKPFAADEQLLPIEKLPKYAQAGFEGFKNLN
RIQSKLYKAAMETDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIYIA
PMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIILDEIHLLHDDRGPVLESLVARTIRNIEMTQEDVRLVGLSATLPNYEDVA
TFLRVDSTKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYSF
AIHHAGMSRVDRTLVEDLFADKHIQVTSCLTIWLLRVFSLSSEFKNITVREEEKLELQKL
LERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVL
NRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVKKIEKKNFPFERLYDLNHNE
IGELIRMPKMGKTIHKYVHLFPKLDLSVHIQPITRSTLKVELTITPDFQWDDKVHGSSEA
FWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPLPPQYFIRVVSDRWLSCET
QLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTIY
NSDDNVFVGAPTGSGKTICAEFAILRMLLLNSEGRCVYITPMEALAEQVFMNWFEKFQDR
LYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNVSLFIVDETHLIG
GSNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRP
VPLELHIQGFNISHTQTRLLSMAKPVYHAIVKHSPKKPIIVFVPSRKQTRLTAIDILTAC
SSDVQRQRFLHCTEKDLAPYLDKLSDNTLKETLLNGVGYLHEGLSSLERRIVEQLFNSGA
VQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKIHAYVDYPIFDVLQMVGYANRPLQDDEG
RCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFL
YRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKCISIEDEMDVAPLNLGMIAA
YYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIRHREDNLLRQLAQKVPHKLT
NPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPAL
AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEDRTELLELT
DAQMADVARFCNRYPNIELSYEVAEKDSIKSGGAVVVLVQLEREEEVTGPVIAPLFPQKR
EEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEY
KFSVDVKEAESDSDSD
NT seq
5811 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaactgcccgtagcttgcagtacgagtacaaggcgaactctaaccttgta
cttcaagcagatcgttctttgatagaccgaacccgtcgcgatgagcccacaggagaagtg
ttatctttggtggggaagttggacgggacccgtatgggtgacaaggctcaaaaaaccaaa
ccacaaatgcaagaagaaagacgcgctaagaggagaaaacgagatgaagacagacatgac
atcaacaagatgaagggattcaccctcctgtcagaaggcattgatgaaatggtggggatt
atttacaaaccaaaaaccaaagagactcgggagacatatgaagtccttctcagtttcatc
caggctgctctgggagatcagcccagagatatcttgtgtggtgctgcagatgaagttttg
gctgtcctgaagaatgacagactacgagataaagagaggagacgagaaatagaacaactc
ctgggacagaccgatgacacacgataccatgtgcttgtcaacttgggcaaaaagatttca
gattacggaggggacaaagaaattcagaatatggatgacaatattgatgagacatatgga
gtcaatgtacagtttgagtctgatgaggaggttggagatgaagatgtgtatggagaggtg
agggatgaggcttccgatgatgatatggatggagatgaagctgttgtgcatgggacactc
tcagccaatcttgtgtcatctggagagctgatgagtactaagaagaaggatcttcaccct
cgtgatatcgatgctttttggttgcaaaggcagctcagcaggttttatgatgatgccatt
gtctctcagaagaaagctgatgaagttctggaaatcttaaagactgcaggagatgaccgt
gaatgtgaaaatcaattggtcttgttgctgggttttaacacatttgacttcattaaaatt
ttgagacagcatcgtatgatgattctgtactgcacactgttggccagcgctcagagtgaa
gcagaaaaagagagaattatgaataaaatggaggcagactctgagctctccaaatatctg
taccagctacaggagactgaaaaggaggatctgattagggaggaacggacacgccgtgag
agggtaagacagtcacgcgtggacacagatttggaaagtatggagatggagcaagataac
ttcactcctcgtcaagtcttggatttggaagatttagcctttgctcaaggtagccacttc
atggcaaacaagcgctgtcaactgccagatggctcattcaggcgtcaaaggaaaggttat
gaggaagtgcatgtacctgccctcaaacaaaaaccatttgctgctgatgagcaactctta
cctattgagaaacttccaaaatatgcccaggctggatttgaagggtttaagaatttgaac
agaatacagagcaaactatataaagctgccatggagactgatgagaacctgcttctgtgt
gcccctaccggagccggaaaaacaaatgttgctctaatgtgcatgctgcgggaaataggg
aagcacataaatgtggatggcacaatcaacgtggacaactttaaaattatttacattgca
cccatgcgatccttagtacaggaaatggtgggaagttttggaaagagattggctacatat
ggtatcacagtagctgagctgactggtgatcaccagttgtgtaaggaagagataaacgct
acccagattattgtctgcacaccagagaagtgggacatcattacacgtaaaggaggagaa
cgaacttacactcagcttgtccgtctaataatcttggatgagatccaccttttgcatgat
gacagaggtcctgtgctagagtccttggtggcccgaactattcgtaacattgaaatgaca
caagaagatgtgaggctggttggccttagtgccactttgccaaactatgaggatgtagcc
accttccttcgtgtggactctaccaaaggtcttttctattttgacaacagtttccgacct
gtacctctggagcagacatatgttggtatcacagagaagaaggctattaaacgtttccag
atcatgaatgagattgtatatgagaagatcatggagcatgctgggaaaaaccaggtgctg
gtctttgtccattccaggaaagaaactggtaagacatccagagccatcagagacatgtgc
ttggaaaaggatacactaggtcttttcttgagagaaggatctgcatctactgaggtattg
cgtacagaagccgagcaatgcaagaaccttgagctgaaagacctcctgccatacagtttt
gctattcaccatgcaggaatgagtcgtgtagataggactctagtggaggatctgtttgcc
gacaaacacattcaggtaacctcatgtcttacaatatggttgcttcgtgtcttctcactg
tcttcagagttcaagaatatcacagtcagagaggaagagaagttggagctgcagaagctg
ctggaaagggtaccaatacctgtaaaggaaagcatagaggaaccaagtgctaagatcaat
gtcttgctccaggccttcatctcacagctgaaactggaaggttttgctctaatggcagac
atggtgtatgtcacacagtctgcaggtcgactcatgcgtgcaatatttgaaatagtatta
aatagaggatgggcacagcttaccgacaagactttaaatctctgcaagatgattgacaag
agaatgtggcagtccatgtgtcctctccgccagttcaagaaactgcctgaggaagtggtt
aagaagattgaaaagaagaacttcccttttgagcgcttatatgatttgaatcataatgaa
ataggtgagctgatccgaatgcccaaaatgggaaagacaatccataaatatgtgcactta
ttccctaagttggatctatcagtgcatatacagcccatcactcgttccacgctcaaagta
gagctgacaattacccctgacttccagtgggatgacaaggttcatggatcttctgaagct
ttctggattttggtagaggatgttgacagtgaagtgattttgcatcatgagtattttctt
ctcaaagcgaaatatgcccaggacgagcatcttgttacattctttgtgcctgtgttcgag
ccacttcctccacaatacttcattcgtgttgtatctgatcgctggctgtcctgtgagaca
caacttccagtctccttccgccatttaattcttcctgagaaataccctccacctacagag
ctactggaccttcagcctcttcctgtctctgctttgcgaaacagtgcatttgagagtctt
tatcaagacaaattcccattttttaaccctatccaaacccaagtctttaacactatctat
aacagtgatgacaatgtgtttgtgggagctccaactggcagtgggaagactatatgtgct
gaatttgccatccttcgaatgttgctactgaactcagaagggcgatgtgtatatatcact
cctatggaggctctggccgaacaggtgttcatgaactggtttgagaagttccaggacagg
ctttataagaaagttgtactcctaactggtgagaccagcacagacttaaaattactgggg
aaaggtaacatcataatcagtacccctgagaagtgggacatcttgtcccgaagatggaaa
cagcgtaagaatgttcagaatgttagcttatttatcgtggatgagacccatctcatcggt
ggatctaatgggcctgtgttggaggtcatctgttcccgtatgcggtatatctcctctcaa
atcgagaggccgatccgaattgtggctctcagttcttccttgtcgaatgctaaagatgtg
gctcactggctgggatgcagcgccacctcaacatttaacttccatccaaatgtgagacct
gtcccattagaattacatatacagggatttaacatcagccacacacagaccagactgctg
tccatggccaaacctgtgtaccatgccattgtgaaacattctcccaagaaacccatcatt
gtctttgttccatcaaggaagcagactcggctcacagctattgacatactcactgcatgt
tcctctgatgttcagcgacaaagattcctgcactgcacagagaaggatctggctccgtac
cttgacaaactaagtgataacacgttgaaagagacccttctgaatggcgtgggttatctc
catgagggtctgtcatcgttggagaggcgaattgttgagcagcttttcaattcaggagca
gtacaagtagtagtagcttctcgcagtctttgctggggtctcaacgttgccgctcacctt
gtcatcatcatggacactcagtactataatggaaagatccatgcgtatgtagattacccc
atctttgatgttcttcagatggtagggtatgccaacaggcccttgcaagatgatgagggg
cgatgtgttatcatgtgtcaagggtcaaagaaggatttctttaagaagtttttgtatgag
cctctgcccgtggaatctcacttggatcactgcttacatgaccactttaatgctgaaatt
gtcaccaagactgttgaaaacaaacaggatgctgtggattatcttacctggacattcttg
tacagacgaatgacacagaaccccaactactacaatctgcagggtgtctcccatagacat
ctgtcggatcatttgtcagagctggtggaacataccctcagtgacctagaacagtccaag
tgtatcagcattgaagatgaaatggatgtggcaccgcttaatctgggcatgattgcagcc
tattattacatcaattacaccaccattgaactcttcagtatgtctttgaatgccaagacc
aaggtacgaggattgatcgaaatcatctccaatgctgcagagtatgaaagtataccaatc
cgccaccgggaggacaacctgctacgccagctggcacagaaggttccccacaaactgacc
aatcctaaattcaatgacccccacgtgaagactaacctactgctccaggctcacctctcc
cgcatgcagctgagtgcagagctccagtcagacactgaggagatccttagtaaggcaatc
cggcttatccaagcatgtgtggatgtgctctccagtaatggctggctcagtccagctctc
gctgctatggaactggcacagatggtcacacaagctatgtggtctaaggattcttacctg
aaacagttgccacacttcacttctgagcatatcaagagatgcacggataagggagtggaa
agcgtgtttgatatcatggagatggaggatgaagatcgcacagagctgctggaactcact
gatgcccaaatggcggatgtggccagattctgtaaccgctatccaaatattgagctgtcc
tatgaggtggcagaaaaagattctataaagagtggtggtgctgttgtggttcttgtgcag
ctggagcgagaggaggaagttacaggtcctgtaattgctcccttattcccccagaaacgt
gaagaaggctggtgggttgtgattggagatgctaaatccaacagcctcatctccatcaag
aggctgacattacagcagaaagctaaggtaaaactggattttgtagctccagccactggc
gcccataactacaccctgtattttatgagcgatgcttacatgggctgtgaccaggagtac
aagttcagtgtagacgttaaagaagcagagagcgacagtgactcagattaa
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integrated database retrieval system
