Pyxicephalus adspersus (African bullfrog): 140323031
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Entry
140323031 CDS
T11284
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140323031 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140323031 (XAB2)
03041 Spliceosome [BR:
pads03041
]
140323031 (XAB2)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140323031 (XAB2)
Spliceosome [BR:
pads03041
]
Complex B
Other components
Prp19-related factors
140323031 (XAB2)
Complex C
140323031 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_19
TPR_15
TPR_8
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_16
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
140323031
NCBI-ProteinID:
XP_072255863
LinkDB
All DBs
Position
2:complement(17868491..17880698)
Genome browser
AA seq
840 aa
AA seq
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MPEKQILIEEDDLQYEEEILRNPYSVKCWMRYIEFKQSAPAHTLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRRCLTDPAFEEVNNCHERALVFMHKMPRIWLDYCQSLMDQCKITRT
RRTFDRALRALPITQHHRIWPLYLKFVRAHSLPETAVRVYRRYLKLSPENAEEYIKYLRS
VDRLDESASRLAAIVNQEDFVSKEGKSNYQLWQELCTLLSKNPGSIRSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHIRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSXAQFEESVIAA
KMETVSEMGKEEEDDIELELRLARFEQLIERRPLLLNGVLLRQNPHNVHEWQKRVQLYKD
KPREIINTYTEAVQTVDPAKATGKPHLLWVDFAKFYEDNGQIDDARAILQRATQVQYTRV
DDLASVWCQFGEMELRHENYEEALKILRKATAVPGRKAEYFDTSEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFTKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEQDEQYEMFNIYIKRAAEIYGVTHTRSIYERAIELLSDEQSREMCL
RFADMECKLGEIDRARAVYSYCSQMCDPRLTAGFWQTWRDFEVRHGNEDTMREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGGAGQESKEPVDEMQALEQKAAVVAAEAEKDKPEIKDRIL
FVRSDASNTELAEMALQANPDEINIGDEDESEEEMEPDEVQVEQKSVPASVFSGLADDDD
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgccggagaaacagattctaattgaggaggatgaccttcagtatgaagaggagattcta
cgtaacccgtattcagtcaagtgctggatgcgatatattgaattcaagcaatctgccccg
gcacacacacttaacctgatatacgagagagcactgaaggagctgccaggaagttacaag
ttgtggtatgcttacctaaaacaacgcagaaagcaggtgaagagacgatgccttaccgat
ccagcctttgaggaagtgaataactgccatgagcgagcccttgtcttcatgcataagatg
cccagaatttggctggattactgccagtcccttatggatcagtgtaaaatcactcgcaca
agaaggacatttgaccgtgctcttcgtgcactccccattacacagcatcatcgcatctgg
ccattgtacctgaaatttgtccgtgctcactctcttccggagacagcagtcagggtttac
aggagatacctgaagctgtcacctgagaatgcagaggagtatatcaagtatttgcgctct
gtggacagattagatgagtctgcttccaggttggcagccattgtaaaccaggaggatttt
gtgtccaaagagggaaaatcaaactatcagctgtggcaggagctgtgtaccctcctatcc
aagaacccaggatctatacgctctttggactctgcagccattattcgcggtggcctcaca
cgcttcactgaccagaggggaaagttgtggtgtgcccttgccgagtaccatatccggagt
ggtcattttgaaaaggctcgagatgtctatgaagaggccattcagacagtcaccaccgtc
cgtgacttcactcaggtgttcgatagttaggctcagtttgaagagagtgtcattgcagcc
aaaatggaaacagtcagtgagatgggaaaagaagaggaagatgacatagagttggagcta
cgattggctcgcttcgagcagctcatagagaggcggcctttgttactgaatggagtgctg
cttagacaaaacccgcataatgtccatgaatggcaaaagagagtgcagctgtacaaggac
aaaccacgagagatcataaacacatacacagaagctgttcagactgtggatccagcaaag
gccactgggaagccacatctgctctgggttgattttgccaaattttatgaagacaatgga
cagattgatgacgcccgagccatcctccagcgagccactcaggtacaatacacacgtgtg
gatgacttggcctctgtctggtgccagtttggtgagatggagttgaggcatgagaactat
gaggaggctttgaagatacttaggaaagccacggcagtgccaggtcgcaaggctgaatac
tttgacacctcggagcctgtgcagaatagactgtacaagtcattaaaggtgtggtccatg
ttggctgatctggaggaaagtttaggcacttttaagtccaccaaggctgtttatgatagg
atcattgatctccgaatagccaccccgcagattatcatcaattatgctttattcctggag
gaacacaactattttgaggaaagttttaaggcctacgagcgaggcatcgcccttttccgt
tggccaaatgtctatgatatctggagtacttatctgtcaaaattcattgcacggtatgga
ggaaagaagctggagagagctcgggatctgtttgaacaggctctggatgggtgccctaga
aaatttacaaaaaatatctttctcttgtatgctaagctggaagaagagcacggtctggcc
cgacatgccatggctttatacgagcgagctacccaggctgtagagcaagatgaacagtat
gagatgtttaacatttacatcaaaagagctgctgaaatctatggagtcacacacacccgc
agcatttatgagcgagccatagagctgttgtcggacgagcagtctcgggagatgtgtttg
cgctttgcggatatggaatgtaagcttggagagattgatcgagctcgagctgtgtattcc
tactgttctcagatgtgtgatcccaggctgacagctggcttctggcagacttggagagat
tttgaggtgcgccatggcaatgaggacactatgagagaaatgctgcgtgtaaaacggagt
gtgcaagccaaatacaacacacagggcactttccttgtatctcagagactgcgggcagag
ggaggagctggccaggaatctaaagaaccggtcgatgagatgcaggctctggagcagaag
gcagcagtggtggcagcagaggctgaaaaggataaaccagagattaaagacaggattctg
tttgtcaggtctgacgcttccaacacagaattagcagagatggccctgcaggcaaatcct
gatgagattaatattggtgatgaagacgagtcagaagaggagatggagcccgatgaagta
caagtggagcagaagtcggtccccgcttccgtcttctccgggcttgccgatgatgatgac
taa
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