Pyxicephalus adspersus (African bullfrog): 140324164
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Entry
140324164 CDS
T11284
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03013
Nucleocytoplasmic transport
pads03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140324164 (UPF2)
03015 mRNA surveillance pathway
140324164 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140324164 (UPF2)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140324164 (UPF2)
mRNA cycle factors
P-body specific factors
140324164 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF4835
DUF1722
Motif
Other DBs
NCBI-GeneID:
140324164
NCBI-ProteinID:
XP_072257876
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All DBs
Position
2:108432543..108464293
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AA seq
1253 aa
AA seq
DB search
MPAERKKLSSMEERDSVRDCSEKKPASSRERVKDEKSSGKRDQLKLSDEKKKKPDDERRK
KEDKDVKKKEDVVGKTEEEEKQAQDEQKKKADDQNDAANQLKEKEEAHQLHQEAWERHLG
RKELRSKNQNAAEYRPEEHFFSKLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSK
YIAEAAASIVEAKLKISDVNCAVHLCSLFHQRYADFAQSLLQVWKKHFEARKEDKTPNIT
KLRTDLRFIAELTIIGIFTDKEGLSLIYEQLKNIIAADRESHTHVSVIISFCRHCGDDIA
GLVPRKVKHASEKFGLNFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNIERQ
NRRILHTKGELSEDRHKQYEEFSTSYQKLLANSQSLADLLDENMPELPQDKPVPEEHGPG
IDIFTPGKPGDYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNERSAQGKDSVKDDL
KDSKDCKERDTSTTEELELELENLDINDDPMEIEGIEEAEDLTKKLLDEQEQEDEEASTG
SHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPF
YARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFNK
TDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLD
ARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQ
DPEVREYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQ
PKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFISFGVNSDGTPSPLDPPEHLFRIRL
VCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDVWTKDYPFPIDIDYMISDTLE
LLRPKIKLCNSQIEAMRQVQDLEREFLVKLGLANDKDAKHSLSEGEALEDDDDEEEEEAG
AETEEQSGNESERNDHEEDDASENEEDEREEEEEENTDYMTDSNKENETDEENTAVMIKG
GGIKHVACAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPTITSG
EGDADCADTMPFVMLTRRGNKQQFKILNVPMSSQLAANHWSQQQAEQEERMRMKKLTLDI
NERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgaacgtaagaagctatccagcatggaggagagagattctgttagagactgt
agtgagaaaaaaccagcaagcagcagagagagagtcaaagatgagaagtcaagtggcaaa
agggatcaattaaagctctcggatgagaagaaaaagaaacctgatgatgaacggcgcaag
aaagaggataaggatgttaaaaagaaagaggatgttgtagggaaaactgaggaagaagaa
aaacaagcgcaagatgaacagaagaagaaagctgatgatcaaaatgatgctgcaaaccag
ttaaaagagaaagaagaagcacatcagctgcaccaggaagcctgggagcgacacctaggc
aggaaagaacttcgcagcaaaaatcaaaatgctgctgaataccgacctgaagagcacttc
tttagcaaacttgactccagcctcaaaaagaatactgcctttgtgaaaaagcttaaaacc
attactgagcagcaaagagattctttatctcatgatttcaatggccttaacttaagcaag
tacatagcagaagctgctgcttccatagttgaagcaaaacttaaaatttctgatgttaac
tgtgcagttcatctgtgttctctgtttcaccagcgatatgcagattttgctcaatctcta
cttcaggtgtggaagaagcattttgaggctcggaaagaagataaaactcccaatataact
aaactgagaacagatttgcgtttcattgcagagttaacaattattgggatctttacagac
aaagaaggcctctctttaatctatgagcagctaaagaatattattgctgccgatcgagag
tctcatactcatgtgtctgtaattatcagtttttgccgccactgtggtgatgatattgca
ggtttagttcccagaaaagttaaacatgcatctgaaaaatttggtcttaactttccacca
agtgagatcataagcccagagaaacaacagcctttccagaatttgctgaaagaatacttc
acttcactgaccaagcacctaaaaagggaccatagggaactacaaaacatagaacgccag
aacaggcgcatcctccataccaagggggagctgagtgaagacaggcacaagcaatatgag
gaattttcaacatcttatcagaaattattagctaattctcagtctctggctgatctcctg
gatgaaaatatgcctgagcttcctcaagacaagcctgttccagaagaacatggacctggc
attgatatattcacacctggaaagcctggtgattatgacttagaaggaggcatatgggaa
gatgaggatgcccgcaacttctatgaaaatttgattgaccttaaagcatttgtccctgca
attctcttcaaggacaatgaaagaagtgctcaaggcaaggacagtgtaaaagatgactta
aaagattccaaagactgtaaagagagagacacatctacaacagaagaactagaactggaa
cttgaaaatttggatataaatgatgatcctatggagatagaaggaatagaggaagctgaa
gacttaactaaaaaactgcttgatgaacaagagcaagaagatgaagaagcaagcactggt
tctcatttgaaactcatagttgatgcatttatacagcagttgccaaactgtgttaatcgg
gatctaatagataaggctgcaatggatttctgcatgaatatgaatactaaagcaaaccga
aggaaactggttcgagcactttttattgttcctagacaaagattggacctgttgccattt
tatgcacgattggttgcgacattgcacccgtgcatgtctgatgtggcagaagacctctgt
tctatgttgaaaggagacttcagatttcatgtgagaaaaaaggatcagataaatattgaa
acaaagaacaaaactgtgcggttcattggcgagcttgccaagtttaaaatgttcaataaa
acagacactctacattgtttaaagatgctgttgtcagacttttcacatcaccacattgag
atggcctgcaccctgcttgaaacctgtgggcgattcctcttcaggtctccagattcgcat
ttgcgcactagtgttctattggaacaaatgatgcgtaagaagcaagccatgcacttggat
gcgagatatgtaacaatggtggaaaatgcctactattattgcaacccaccccctgctgaa
aaaactgtaaagaagaagcggccacctctgcaagaatatattaggaaattgctgtataag
gacctttccaaagtcacaactgagaaggttttacggcagatgaggaagttgccttggcag
gatcctgaagtaagagaatatgtcatctgctgcatgatcaacatttggaatgtgaaatac
aacagcatccattgtgtggctaacctcttggcaggcttggtgctttatcaggaggatgtt
ggaattcatgtggtagatggtgtgctagaagatatacgtctagggatggaggtgaatcag
ccaaagttcaatcagcgccggataagcagtgcaaaatttcttggagaactttataattat
agaatggtcgaatctgcggttatattccgcacactctattccttcatatcctttggtgta
aactccgatggtactcccagtcctctcgatcctcctgagcatttatttcgtataagatta
gtctgcaccattctcgatacctgcgggcagtattttgaccgaggctctagcaagcgcaaa
cttgattgcttcctcgtttattttcagcgttatgtctggtggaaaaaaagtctggatgtg
tggacaaaagattacccattccccatagacattgattatatgattagtgacacactggag
ctgctaagaccaaaaattaaattgtgtaactcacaaattgaagcaatgcggcaagtgcag
gatctggagcgagagttcctagtaaaactaggtcttgcgaatgacaaagatgcaaaacat
tccttgtctgagggtgaggcactggaggatgatgatgatgaagaggaagaagaagctgga
gcagagacagaagagcagtctgggaatgaaagtgaaaggaatgaccatgaagaagatgat
gcttctgaaaatgaagaggatgaaagagaggaagaggaggaggaaaacactgattacatg
actgactcaaacaaggaaaatgaaaccgatgaagaaaatacagcagtgatgataaaggga
ggtgggatcaaacatgtagcctgtgcagaagatgaagacttcattcaggctctggacaag
atgatgctcgaaaaccttcaacaacggagtggagagtctgtgaaagtgcatcagctggat
gttgccatacccttgcatctgaaaagtcagctgaagaaaggaccaacaataaccagtggg
gagggagatgcagactgtgcagacactatgccgtttgtaatgctaaccagaagaggcaac
aaacagcagtttaaaattctgaatgtaccaatgtcttcccaactggctgcaaatcattgg
agccaacagcaagcagagcaagaggaaaggatgcggatgaaaaagctcacattggacatt
aatgaacgtcaagaacaggaggattatcaggaaatgcttcagtctctggctcagcgccca
gctccagctaatactaacagggagcgtcggccccgataccagcatccaaaaggggcacca
aatgcagatctcatctttaagactggcggcaggagacgttga
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integrated database retrieval system
