Pyxicephalus adspersus (African bullfrog): 140334221
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Entry
140334221 CDS
T11284
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140334221 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140334221 (MTREX)
03041 Spliceosome [BR:
pads03041
]
140334221 (MTREX)
03009 Ribosome biogenesis [BR:
pads03009
]
140334221 (MTREX)
03016 Transfer RNA biogenesis [BR:
pads03016
]
140334221 (MTREX)
Enzymes [BR:
pads01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140334221 (MTREX)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140334221 (MTREX)
Spliceosome [BR:
pads03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140334221 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
140334221 (MTREX)
Ribosome biogenesis [BR:
pads03009
]
Eukaryotic type
Pre-60S particles
Helicases
140334221 (MTREX)
Transfer RNA biogenesis [BR:
pads03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140334221 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Death_3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
140334221
NCBI-ProteinID:
XP_072272535
LinkDB
All DBs
Position
6:complement(85190497..85245303)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEESPASSKAAPSVPATAGASARGRKRNIKDQAANTGPAAVTKREAS
SIDGPEECILGKKLKLDSTATDEINLVDLMPRIKVQEVDTVEGCTHEVALPADDEYMPLR
PRVGKAAKEYPFILDPFQREALLCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
VYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGEASKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNSDEEKKMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVK
KLEEQYNSIQIPNEESVVTYYKIRQQLAKLGKEIEEYIRKPKYCLPFLQPGRLVKVKREE
EDFGWGVVVNFSRKSNVKPNTGDLDPIYVVEVLLNCSKESLKNAATEAAKPAMPDEKGEM
QVIPVLINLVTGISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVVQKTEAFEHRMYSHPLNNDPNLETVYKLCEKKAQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRMGFASSADVIEMKGRVACEISSADELLLTEMMFNGLFNDLTVEQAT
SLLSCFVFQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEVDEETYLGSFRPNL
MDVIHTWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcattcggtgatgatttgtttagcgtgttcgatgaggagagtccggcgagc
agtaaagctgcgccgtctgttccggccaccgccggggcttctgccagaggcaggaagaga
aatattaaggatcaagcagcaaatacaggacccgcagcagtgacaaagcgagaagccagc
tctattgatggaccagaggaatgtatattaggaaagaaactgaagcttgattcaacagct
acagatgaaataaatctggttgatttaatgccaaggataaaggtgcaagaagtggataca
gttgagggctgcacacatgaggtggctctacctgctgacgatgagtacatgcctcttagg
ccacgggttggaaaagcggctaaggaatatccattcatactggatccatttcagagagag
gcccttctgtgtattgataacaaccagtctgttcttgtgtctgctcatacatcagctgga
aaaacagtgtgtgcagaatatgctatagccctggctctcagggaaaagcagagagtaatt
tttaccagccccatcaaagctttgagtaaccagaaatacagagaaatgtatgaagagttc
agtgatgtaggtctgatgaccggagatgtaacaatcaaccctacagcctcctgccttgta
atgacaactgagatcttgcgaagcatgttatacagaggctcagaagtcatgagagaagtt
gcctgggtcatttttgatgaaatccattacatgagagattcagaaagaggagtagtatgg
gaagaaactattatccttctaccagataatgtacattatgtcttcttgtctgccaccata
cccaacgcccgccagtttgcagaatggatctgccacttacataaacagccttgtcacgtc
gtctacacagactatcgtccaactcctctacaacattacatatttccagcaggcggtgat
ggcctccatcttgttgtggatgagaatggtgattttcgggaagacaactttaatacagca
atgcaagtgcttagggatgccggagaagcctccaagggagaccaaaaagggcgaaaggga
ggaacaaaaggaccttctaatgtattcaagattgtcaagatgatcatggagcgcaatttc
cagccagttatcatcttcagttttagcaagaaggattgcgaggcctatgcactgcagatg
tcaaagctggatttcaactctgatgaagagaagaaaatggtggaggaagtgttcaataac
gccattgactgtctgtcagatgaagataaaaagcttccacaggtggaacatgtcctgcct
cttctcaagcgaggtattggaattcatcatggaggattgctgcccatactgaaggagacc
attgagatactgttctctgaaggtctgctaaaggctttgtttgcaacagaaacctttgcc
atgggtataaacatgccagccaggaccgtgttgttcaccaatgcacggaaatttgatggg
aaagattttcgttggatcacatcaggagagtacatccaaatgtctggccgagcaggaaga
cgtggcatggatgataggggaattgtgattcttatggttgatgagaaaatgagcccaaca
gttggcaaacagctgctaaagggatcagctgatcctctcaacagtgctttccatcttact
tataacatggtgctgaacctcctgcgagttgaagaaattaatcctgagtacatgttggaa
aaatccttctaccagtttcagcattatcgggctataccaggagtagcagagaaggtgaag
aagttagaggagcaatataacagtatacagattcccaatgaggagagcgttgtgacctat
tataaaatccgtcagcagcttgccaagcttggcaaagagattgaagaatacattcgcaaa
ccaaaatactgcctgccatttctacagccagggcgacttgttaaggtaaaaagggaagaa
gaggactttggatggggagtggtggtaaacttttccagaaaatcaaatgtaaagccaaac
actggagacttggatccaatctatgtggtggaagtgttgctgaactgcagtaaagagagt
ctgaaaaatgctgcgacagaggctgcgaagccagcaatgccagatgaaaaaggagagatg
caggttattcctgtcctaataaatttagtgactggaatcagcagtgttcgcctctacatt
cccaaggatcttcgacctctggataacagacaaagtgtgcttaaatctatccaggaggtt
cagaagcgcttccctgatggtgtacccttgctggatcccattgatgatatgggtattaaa
gatcctgggctgaaaaaggttgttcagaaaacggaagcatttgagcacaggatgtattca
caccctctaaataatgatcctaatctggaaaccgtgtacaaattatgtgaaaagaaagct
caaattgcagtagatatcaaagctgcaaagcgtgagctgaagaaggctcgcacagtatta
cagatggatgagctgaaatgccggaaacgggtcctcaggcggatgggatttgccagctct
gctgatgtcatagaaatgaaagggcgagttgcctgtgagattagcagtgctgatgagctc
ctcctcactgagatgatgtttaatggcttatttaatgacctgacagtggaacaagctact
tcacttctcagctgctttgtgttccaggaaaattccagtgaaatgcccaaattaacagag
cagctagcaggaccacttcggcaaatgcaggaaacagcacggaggattgccaaagtctca
gctgaagctaaactagaagtggatgaagagacctatttaggatcattccgtcccaacctt
atggatgtcatccacacttgggccaatggcgcaacatttgcccagatctgtaaaatgaca
gacgtgtttgaaggtagtattattcgttgtatgagacgtcttgaagaattactacggcag
atgtgtcaggctgccaaagctattggaaacacagaattggagaacaagtttgcagaaggt
attaccaaaatcaagagggatattgtatttgctgccagcttgtatttgtaa
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