Pyxicephalus adspersus (African bullfrog): 140335082
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Entry
140335082 CDS
T11284
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03015
mRNA surveillance pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140335082 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
140335082 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140335082 (PABPC4)
03041 Spliceosome [BR:
pads03041
]
140335082 (PABPC4)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140335082 (PABPC4)
mRNA cycle factors
Stress granule specific factors
140335082 (PABPC4)
Spliceosome [BR:
pads03041
]
Complex C
Other components
Complex C specific factors
140335082 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RBD_RDR6
RRM_10
RRM_3
POP1_C
DUF1176
Motif
Other DBs
NCBI-GeneID:
140335082
NCBI-ProteinID:
XP_072273560
LinkDB
All DBs
Position
1:complement(88499829..88512057)
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AA seq
627 aa
AA seq
DB search
MHTATSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRERE
AELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFEK
HEDANKAVDDMNGKDVNGKVMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTLISQFQPAPGGYFVPAVPQAQSRP
TYYAPNHIAQMRPGPRWQQAGRPQGFQPMPNTVRQSSPRQSIRHIPPSSSQGTRGISSVA
QRVGVSSATQTIGPRQPVSVPPTRPVPQYKYTRCPLPGVQPIQQTPQPAVHVQGQEPLTA
SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKV
EEAVAVLQAHQAKKDAAQKVGIVAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgctaccagcagctacccaatggcgtctctgtatgtgggggacctacaccct
gatgtcacggaggccatgctgtatgaaaagttcagtccagcgggaccggtgttgtccata
cgagtgtgcagggacatgatcacccggagatctctaggctatgcctatgtcaacttccaa
cagcctgcagatgctgaacgggccctggacactatgaactttgatgtgattaaaggaaag
cccattcgtattatgtggtcacagcgagatccatctcttaggaaatctggcgtgggcaat
gttttcataaaaaaccttgacaaatcaattgacaacaaagcactttatgacacgttttct
gcgtttggcaacattctttcatgtaaggtggtgtgtgatgagaatggctccaaggggtac
gcttttgtgcactttgagacacaagatgctgcagacagagccattgagaagatgaacggc
atgctgctgaacgaccgcaaagtgtttgtagggcgctttaaatgcaggcgagagagggaa
gcagaacttggagccaaagctaaggagtttacaaatgtttatatcaagaattttggagaa
gatatggatgatgagcgactaaaggagactttcagcaaatatggcaagactctgagcgtt
aaggtgatgactgatcccagtggcaagtccaaagggtttggctttgtcagctttgaaaaa
catgaagatgcaaataaggccgttgatgacatgaatggaaaagatgtcaatggaaaggtg
atgtttgtcggcagagcgcaaaaaaaggttgaacgacaagcggaactgaagcggcgattt
gagcagttgaagcaggagagaataagtcgctatcagggcgtaaatttgtatattaaaaat
ctggatgacacaattgacgatgagaagctgcgaaaggagttttctccttttgggtcaatt
acaagcgccaaggtcatgctagaggatggacgaagcaaaggatttggatttgtttgcttt
tcctcacctgaagaagccactaaagcagtcactgaaatgaatgggagaattgtaggctca
aaacctctttatgtagcactagctcaaagaaaggaagagcggaaagctcatcttacgaat
cagtatatgcaacgaatagctggaatgagggcccttcctgccaatactctcattagtcaa
tttcaaccagcaccgggagggtactttgtgccagcagttccacaggctcaaagcagacct
acatattacgctcctaatcatatagctcaaatgcgccctggcccaagatggcagcaagca
ggacgtccacagggctttcagcccatgcctaacacagtgcgacagagtagcccccgccaa
tcaattcgccatatacccccttcaagttctcagggcactcgtggtatctccagcgtagcc
cagagagttggggtttcttctgctactcagacaataggacctcgtcagccagtttctgtt
ccaccaacccgacctgtgcctcagtacaaatatacacgatgtcctctccctggagtgcag
ccaatacagcagactcctcagccggcagtccatgtacaaggacaagaacctcttacggcc
tcaatgttagctgctgccccaccccaagaacaaaaacagatgttaggagaacgtctcttc
cctcttatacaagccatgcatccctcattggcgggtaaaattactggaatgcttctcgag
attgacaattcagaactgctacacatgctggaatccccagagtctctgcgctctaaggtg
gaggaagcagttgctgttttgcaagctcaccaagccaagaaggatgctgctcagaaggtg
ggaattgttgctgctacctcctga
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