Pyxicephalus adspersus (African bullfrog): 140335825
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Entry
140335825 CDS
T11284
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K19720
collagen type III alpha
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140335825 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pads00536
]
140335825 (COL3A1)
Glycosaminoglycan binding proteins [BR:
pads00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140335825 (COL3A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
RNPP_C
Motif
Other DBs
NCBI-GeneID:
140335825
NCBI-ProteinID:
XP_072274897
LinkDB
All DBs
Position
7:65347768..65404778
Genome browser
AA seq
1472 aa
AA seq
DB search
MMSFVQISSLLCILAVAYPSLILAQQQQVEAGGCTHLGQVYADRDVWKPEPCQICVCDSG
SILCDEILCDDTDPECENPEIPFGECCPICPSPPSPTPSAGGNGKTGQKGQKGDNGTPGI
PGRNGENGRPGVPGPPGPPGPPGVCEGCASMGEGGQPNYSPQYDSKSGYDFKSGAGHMGG
QIMPGHPGPPGPPGPSGPAGQPGPHGYQGPPGESGQPGPPGPAGPAGLSGPPGQPGKDGE
SGRPGRPGERGVAGAPGNRGPPGMAGFPGMKGHRGIDGRDGAKGDTGAPGLRGEPGAPGD
NGLPGSAGPRGQPGERGRPGSPGTAGARGNDGAPGSSGQPGPPGPPGNAGFPGGPGPKGE
NGAPGSRGSDGAPGTRGEPGPQGPSGLTGPSGPPGRDGNPGGKGEIGPAGIPGAPGLAGA
RGPPGPPGTNGAPGLRGPSGENGKDGGKGEPGQRGERGESGPPGAPGPAGEEGKKGTNGE
PGTNGLPGTPGERGTPGFRGPPGSNGVPGEKGPAGERGAPGSPGPRGSPGESGRDGIPGP
PGMRGSTGSPGSPGSDGKPGPAGPAGESGRSGNPGPPGPRGQPGVMGFPGPKGSEGQPGK
NGERGGPGSPGTQGLPGKSGEPGAQGPPGAAGPQGERGEPGATGPPGFQGLPGSPGPAGE
NGKPGEAGPKGEVGSPGTPGGKGENGIPGERGLQGPPGAPGTRGASGPPGPDGGKGPAGP
PGPSGAMGPPGLQGMPGERGGFGSPGPKGERGEPGGKGGDGSPGKDGSRGPAGPIGPPGP
AGPSGDKGEGGPAGPPGPVGARGGPGERGETGPPGPAGFPGAPGQNGEPGTKGEKGGPGE
RGEPGPQGAGGPPGGPGPAGNAGPQGSKGDRGAPGSPGSAGFPGARGLPGPPGTNGNAGP
AGPPGGPGKDGPPGPAGSSGAPGSPGSAGPKGEPGTQGERGSPGNRGEPGAPGPSGISGP
AGSRGIVGLPGLQGRPGTPGLPGSKGEDGKPGSNGSPGDRGFPGPPGPAGVNGAPGEAGR
DGNPGTDGQPGRDGSSGPKGDRGENGSPGAPGSPGHPGAPGPVGPAGKNGDRGETGPSGP
AGPSGPAGARGAPGPQGPRGDKGEAGERGTNGIKGHRGFPGNPGPPGPPGSSGEQGVAGS
PGPLGPRGPPGSNGSPGKDGVSGYPGPIGPPGPRGSRGESGPEGTAGQPGPPGQPGPPGP
PGPCCDGGGAHLGSFGGEKGPAGAPYYGDQPLDTTTTAEIMTSLKTINSQIENIISPDGT
RKNPARNCRDLKLCHPEYKSGEYWIDPNQGCKLDAIKVYCNMETGETCINANPRNIPKKK
WHTSSGTDKKHVWFGESMNGGFQFGFGDLNQSEDISDVQIAFLRILSSRGYQNITYHCKN
SIAYMDAQNGNVKKSVKFMSSTESELKAEGNSKFTYTVLEDGCTKHTGEWGRTVFEYRTR
KTMRLPIIDIAPMDIGGPDQEFGVDVGPVCFL
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaatatcctccctgctctgcatccttgcagtggcttacccttcc
cttattttggctcagcagcagcaagtggaggcaggaggatgtactcatcttggacaagtt
tacgccgacagggatgtctggaaaccagagccatgtcaaatctgcgtttgtgactctgga
tccattctgtgtgatgaaatcctgtgtgatgacaccgacccagagtgcgaaaaccctgag
attccatttggagagtgctgtccaatatgtccatcacctccaagtcctaccccaagtgca
ggtggaaatggaaagacaggacaaaaaggacaaaaaggcgacaatggcactcctggcatt
cctggcagaaatggtgagaacggcagacccggtgtacctggacctccaggtcctcctggc
cctccaggagtttgtgaaggctgcgcatccatgggtgagggaggacagccgaactacagt
cctcaatatgactccaaatctggatatgatttcaaatctggcgcaggtcacatggggggt
caaataatgcccggtcatcctggacctcctggcccacctggaccaagtggccctgctgga
cagcctggacctcatggatatcaaggaccccctggtgaatctggacagccaggaccacct
ggacctgcaggccctgctggactttcaggccctcctggtcaaccaggaaaagacggtgaa
tcaggccgaccaggcagacccggagaacgtggagtggctggcgctcctggcaacagagga
ccacctggcatggctggtttccctggtatgaaaggccacagaggcattgatggaagagat
ggcgcaaagggagacactggtgctcctggactcaggggagaacctggtgctcctggtgac
aatggattacctggcagtgcaggtccaagaggtcagcctggtgaaagaggtcgtcctgga
tcacctggaacagctggtgctcgtggtaatgatggcgctcctggatcttccggtcaacct
ggtcctcccggcccccctggtaatgccggttttcctggtggaccaggccccaagggtgaa
aatggagctcctggttctcgtggttctgatggtgctccaggaactagaggtgaacccggt
ccccaaggtccatctggtctaactggcccttctggtcctcctggcagagatggaaatcct
ggcggtaaaggtgaaatcggtcctgccggaattcccggtgctcctggtttagctggtgct
cgtggtccccctggtccccctggcactaatggcgctcctggcttaagaggtcctagtggt
gaaaatggcaaagacggtggaaaaggagagcctggtcaaagaggagaacgtggggaatct
ggacctccaggtgcacctggacctgctggagaagaaggcaaaaaaggaactaatggcgaa
ccaggcactaatggtctaccaggaacacctggagaaagaggtacaccaggttttcggggt
cccccaggaagcaatggagtcccaggtgaaaagggacctgcaggagaacgtggagcaccc
ggtagccctggaccaaggggaagtcctggtgaatctggaagagatggtatccctggacca
ccaggaatgaggggttctactggaagcccaggcagtcctggatctgatggcaaaccagga
cctgcaggtcctgctggagaatctggacgatctggcaatcctggtccaccaggtccaaga
ggtcaacctggagtcatgggtttccctggtccaaagggtagtgagggtcaacctggtaag
aatggcgagaggggtggtcctggatcccctggaacacagggtcttccaggaaagagtggt
gagccaggagcccagggccctccaggtgctgcaggacctcaaggtgagcgaggagaacca
ggagcaactggaccacctggcttccagggtctgccagggtctcctggacccgctggagag
aatggaaaacctggtgaagcaggacctaaaggtgaagttggttctcctggaaccccaggc
ggcaaaggtgaaaacggcattcctggtgaacgaggtctgcaaggtcctcctggagcccct
ggtactagaggtgcttctggtcctcccggtccagatggtggaaagggacctgctggacca
cctgggccttctggtgcaatgggaccacctggccttcaaggcatgcctggagaaagagga
ggttttggaagtcctggaccaaaaggtgaaaggggagaacccggaggcaaaggtggagat
ggatcacctggaaaagatggatcaagaggtcctgctggccccattggtccccctggtcct
gctggtccatctggagacaagggtgaaggtggtccagctggacctccaggacctgttggt
gcacgtggtggccctggggaacgtggtgaaaccggtcctcctggtcctgctggcttccct
ggagctcctggtcaaaatggagaacctggcactaaaggagagaaaggtggtcctggtgaa
cgaggagaacctggtccccaaggtgctggtggtcctccaggtggtcctggtcctgctggc
aatgctggtcctcagggatcaaagggtgaccgtggtgctccaggatcacctggttcagct
ggtttccctggagctcgtggtttacctggacctccaggtactaatggtaatgctggccct
gctggtcctcccggaggccctggaaaggatggtccacccggtccagctggcagttctggt
gctcccggaagtccaggctctgccggtccaaaaggtgaaccaggtacacaaggagaaaga
ggatcaccaggaaatcgaggagaaccaggtgccccaggtccttcaggtattagtggtcca
gctggctcacgtggtattgtaggattacctggcttacagggtagaccaggaactccaggt
cttccaggctctaagggtgaagatggaaaaccaggttccaatggatcacctggtgatcgt
ggtttccccggtccaccaggaccagccggtgttaatggagcccctggagaagctggaaga
gatggtaaccctggcactgatggtcaacctggacgtgatggatcctccggacctaagggt
gatcgtggtgaaaatggctctcctggtgctcctggatctcctggtcaccctggagcccca
ggtcccgttggccctgctggaaagaatggcgacagaggagaaactggtccttctggtcct
gctggcccatctggtcccgctggtgctcgtggcgctcctgggccacaaggtccacgtggt
gataaaggtgaagctggtgaacgtggtaccaatggaattaaaggtcatcgtggattccct
ggtaaccctggtccccctggcccacctggatcttctggagaacaaggtgttgctggatcc
cctggtcctttaggcccaaggggtcctcccggatcaaatggatctccaggcaaagatggt
gtttctggatatcctggacctattggccctccaggtcctcgtggtagcagaggagaatct
ggcccagagggtacagctggtcagcctggacctccaggacaacctggtccccccggccca
cctggaccttgctgtgatggtggtggagctcatttgggatcatttggtggagagaaagga
ccagccggagccccatactatggtgaccaaccacttgatacaacaaccactgctgaaatt
atgacttcacttaaaacaatcaacagccaaatagaaaacattattagtccagatggcacc
agaaagaaccctgctcgcaactgtcgtgatctcaaattgtgtcacccagaatacaagagt
ggtgaatactggatcgatcccaaccaaggatgtaaattggatgccattaaagtttactgt
aatatggaaactggtgaaacttgtattaatgccaatccaagaaatatcccaaaaaagaaa
tggcacaccagctctggaactgataaaaaacatgtctggtttggagagtccatgaatggt
ggtttccagtttggctttggagacctaaatcaatcagaagatatttctgatgtccagata
gcattccttagaattctgtccagcagaggctaccagaatatcacttaccactgcaaaaac
agcattgcatatatggatgcacagaacgggaatgttaagaagtctgtaaaattcatgagc
tctaccgaaagcgagctgaaagctgaaggaaacagcaaatttacatacactgttttggag
gatggttgcactaaacacacaggagaatggggtcgaacagtatttgaatacagaacacgc
aagacaatgaggttacccatcatagatatagcaccaatggatatcggtggaccagatcaa
gaatttggagttgatgttggccctgtatgcttcttgtaa
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