Pyxicephalus adspersus (African bullfrog): 140335993
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Entry
140335993 CDS
T11284
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140335993 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140335993 (PARN)
Enzymes [BR:
pads01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140335993 (PARN)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140335993 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Motif
Other DBs
NCBI-GeneID:
140335993
NCBI-ProteinID:
XP_072275129
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All DBs
Position
7:complement(79388009..79455727)
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AA seq
631 aa
AA seq
DB search
MEVIRINFKEQLPIVYQAIEESDFLAIDGEFSGISDGPSVNTLTNGFDTPEERYHKLKKH
SMDFLLFQFGLCTFKYENAESKYITKSFNFYIFPKPFSRNSPDKTFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERLLRDQYEEKRLQANGSGAVSYISPNAPKTPVSIPDDQKSF
VDKTMERLEAFLKDEERKTLELEPCTGYQRKLIYQTLNWKFPQGIHLETVETEKKERYIV
VSKVDTEERKKREQEKQAREQEKQAKELEELNDAVGFSRVIHAISTSGKLVIGHNMLLDV
MHTIHQFFCPLPDELSEFKEVTNCVFPRVLDTKLMASTQPFKEIICNTSLAELQKRLKEP
PFKSPKVDSPEGFPSYNTNSEQLHEAGYDAYITGLCFISMANYLGSFLNPPKGHVSARSD
IIRPFFNKLFLMRVVDIPYLNLEGPDLLPKRDHVLHVTFPREWKSFDVYQLFSAFGKIDM
SWIDSTSAFVSLSKPEQVQIAINTSRYAESYRIQTYAEYIEKKNQDSNAKRKWNEDGWKD
LEKKRLKTHHNLYIPQNPRDFYANRRSMSPIQEETVSEDVGDDLVKEGEESSDAGATDSK
KKMKSHKRQKLDRDPAECSKSSVLFEVPETW
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgatcaggattaattttaaggagcagttgccaattgtctatcaagctattgaa
gagtcagatttcttggctattgatggagagttttcaggaataagtgatggtccatctgtt
aacactttaacaaatggctttgacaccccagaagaaaggtaccataaactgaagaagcat
tcaatggacttcctgctgtttcagtttggtctatgcacttttaaatatgagaatgcagag
tcaaaatatattaccaaatcctttaatttttacattttcccgaagccatttagccgaaat
tcaccagacaagacgtttgtttgtcagagctcaagtatagactttttggctaaccagggt
tttgattttaataaagtatttcgtaatggaatcccatatttaaatcaggaggaggaacgt
ctgctcagggatcagtatgaggagaagcgtttacaagctaatggttcaggtgctgtatcg
tacatatctcctaatgcaccaaaaactccagtatccattcctgatgatcagaaaagtttt
gttgacaaaacaatggaacgtttggaagcttttttaaaagatgaagaacggaaaactcta
gaactggagccatgtacagggtatcagagaaagctcatctaccagacactgaactggaag
tttccacagggtatccatttggaaactgttgaaacagagaagaaggaaagatatattgtt
gttagtaaagttgatacagaagaaagaaagaaaagagaacaggaaaagcaagcaagagag
caggaaaagcaagcaaaggagctggaagagcttaatgatgctgttgggttttcaagagtt
attcatgcaatttcaacttctggtaaactagtgattgggcacaatatgctgttggatgtg
atgcacacgatacaccagttcttttgtccattgcctgatgaattaagtgagtttaaggaa
gtcactaattgtgtattcccaagagttctggataccaagcttatggcttctacacaacct
tttaaggaaattatttgtaacacatcacttgctgaattgcaaaagagattaaaagagccc
cctttcaaatctcctaaagttgacagtcccgaaggctttccgagctacaacacaaactcc
gagcaactacacgaagctggttatgatgcctacatcacaggactttgctttatatccatg
gcaaactatttaggttcatttttaaatccaccaaaggggcacgtatcggcccgatcagat
atcattcgcccattttttaacaagctgtttttgatgagggttgtggatattccctacctc
aacctagaggggccagacttgttgcctaaacgagaccatgtccttcatgtgacttttcca
agagaatggaagagctttgacgtttatcagctcttcagtgcttttggtaaaattgacatg
tcctggatagatagtacgtcagcatttgtgtctctcagcaagccagagcaagtgcaaata
gctattaacaccagcaggtatgcagagagttaccgtatccagacatatgcagaatatatt
gagaaaaagaaccaagactccaatgctaaaagaaaatggaatgaagatggctggaaagat
ctggaaaagaaaaggttaaaaacccatcacaatttatatattccacaaaacccaagagat
ttttatgcaaacaggagaagtatgagtccaatacaagaagaaaccgtctctgaagatgtt
ggtgatgatctagtcaaagaaggtgaggagtcttctgacgctggagcaacggattcaaaa
aagaaaatgaaaagtcacaagcgtcaaaaactagaccgtgatccagcagaatgcagtaaa
agctccgtcttatttgaagtcccagagacctggtag
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