Pyxicephalus adspersus (African bullfrog): 140336006
Help
Entry
140336006 CDS
T11284
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
140336006 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pads04121
]
140336006 (SLX4)
03400 DNA repair and recombination proteins [BR:
pads03400
]
140336006 (SLX4)
Ubiquitin system [BR:
pads04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
140336006 (SLX4)
DNA repair and recombination proteins [BR:
pads03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
140336006 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
zf-met
Rad50_zn_hook
zf-C2H2_jaz
DUF7410
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
140336006
NCBI-ProteinID:
XP_072275164
LinkDB
All DBs
Position
7:complement(15753469..15771018)
Genome browser
AA seq
1497 aa
AA seq
DB search
MVESDDEFTELCTKLLKRVKKCKPSEGQSASTASTTSKSKLKKPKLTRVKSKTNVGLSKE
VETNIKTGDGPEKPNNERDAESTVQALLSNGHTENDCSSRESQEETTGQQDQPRAKDLVL
ERMQQYKRTSPVRMKLNPMVANGEQAFTVAADVLTDGDLAIALQMDPKNHSASLEDEGLF
FCQLCQKDLTVMSSVLREQHVNRCLDQSENLQSNPVAPVVPSCPLCGKPFTTEKARASHL
KRCATKLEVPAQTLLQAVQRQATETGTEAPTGVAQVKRKGVPKQKEPSKKRKVAKTGKEM
EDLMIAMALSRSLQEESFHNPGCAQPSRQVVRPEKKGRRKKKDKPPPLLLLQAPEEAVQK
LQKRFSMLLSEEPVENNLIALPASRFWNIQEEERETWKLRAGKKCVLWDISNMMETRDTV
AYYTAELNPPITPWKPLSKKVLNSQPCAVTPNLPVVMPENQMLSDEGASPATPFKDQKRL
SDSQKDKQALLDLAELAGEGMTLTQWNYVPSKASNKTGRESPVSVTCSGFIPSEEEVERK
ESQIPDANKNAVMTLMADFMEMVNNPHLSDAQLQTDCGEILHVHMFVLYARCPLLVEAVH
SEGFYVDEASTGRVRRFLLNDVSADAALFFLRFLYSAKTDIPSHCLTHVCELARRFGVKS
LIDTCELLVNMPHVSEDVAPTEEEEDDDGGEREENFQELLKSMWIDEEEDVFADQKVAEG
LEEEEKADDGPVEEVDLEEVYEFAATQRKMPVEQSTEAESSSEPEVGYQDKEHDQSSSSR
SHTSREEQAMDIVNHHSVDCHNSLAVSSVQKDVSGSSSKMSPASLESSPLIPPLASSPSW
TKSHPDSVHCASPFQSPSRNHSSTTTSPTHQLFTDSNREPVQSPSALLRESSSEVVHTIS
LISPDREEDPEADLFSQHSLKPLDDSYDRMFSETCGDYAEPSGFCNASSRVHADASHHEP
PVLTSSPSVIQHPILPELGSSPNIRPQTQSFLGHSSHSALENGNSPVSFGRDSKHSEPTQ
NSVNVSATAVSQEQDIILILSSDEETEGSSQAAKVKAPSNRFDIFTSIKESPASFSIMKN
SEGHSLLDKSSSSEMSWLVPATPAPHPAETGLSLLKASHIPQSPQSKAGNHDDTLKDLVS
PTQRTTFVNVSLNTTKTSTLASRAQFPNTPKKITESCTSTDSKVSCVHASPMSSISNSTV
FEVVESEEEGAVAEPQADISAYSFQMDYDEPPIPIDDDLWLNAQESPAKPYSTPAHNASF
HIDITPTKGPETSSSTSALQEKDCEPDNSEDSPGKPSSQIKESSYLNSKLWDEWEEEDPE
LPVFLPLSQRLNNVPDVQKLLKTPVSIVRKRELPPKVAITPLPDYSDMDTPVLKKELNKF
GVRALPKKQMVLKLKEIFMYTHQVMSSDSEDDMPVSQRSRRNIMNEVQGEPLPAPKKQKA
ATTSTTTSISLTQGRKTTSTACAAQDTDSGDDQPPTASQESTTSSVGASDTSSTSHR
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atggttgaatcagatgatgaattcactgaattatgtaccaagctcttgaaacgggttaaa
aaatgcaaaccatccgagggccagagtgcttccacagccagcactacaagcaagagcaag
ttaaagaagcctaaacttaccagggtaaaaagcaagacaaatgtggggctcagtaaggag
gtggaaacaaatatcaaaacgggagatggaccagagaagccaaataatgagcgtgatgca
gaaagcactgtgcaggccctcctgtccaatgggcacacagaaaatgattgtagtagtaga
gagtctcaggaagaaacaactggacagcaggaccaaccacgtgcaaaagatcttgtgcta
gaaaggatgcagcagtataaaaggacatcccctgtccgaatgaaattgaatcccatggtg
gccaatggagaacaggcatttacagtggctgcagatgttcttactgatggagatctggct
atagctctgcaaatggacccgaagaaccattcagctagcctagaagatgaaggactcttt
ttttgtcagctgtgccagaaagacctcactgtcatgagcagcgtgctgcgggaacagcac
gtcaacagatgtctggaccagagtgagaatttacaaagtaatcctgtcgcccctgtggtt
cccagttgtccattatgtggaaaacccttcactacagaaaaggcccgcgcctctcacctt
aagcgctgcgctaccaagctggaggtaccggcgcagacactgctgcaagctgtccagaga
caagcaactgagacgggcacagaggcaccaacaggagtggcccaggtaaagaggaaagga
gtaccaaagcagaaggaaccctctaagaaaaggaaggtagcaaagactggaaaagaaatg
gaagatttaatgattgcgatggcactgtcacgttctcttcaggaagaaagcttccataac
cctgggtgtgctcagccctccagacaggtcgtccgaccagaaaagaaaggtcggcggaaa
aagaaggacaagccacctcctcttttgctgctccaggccccagaagaggctgtgcagaag
cttcagaagaggttttctatgctgcttagtgaagaacctgtggagaacaaccttatagca
cttcctgctagccgtttctggaacatacaagaggaagagcgggaaacatggaaactgcgt
gctggaaagaaatgtgttctttgggatatcagtaacatgatggagaccagagatactgtc
gcctattatacagcagagctaaatcctccaataactccatggaagcctctctcaaagaag
gtgctaaactcacagccatgtgcagttactcccaacttacctgtggtaatgccagaaaac
caaatgctcagtgatgaaggtgcttctcctgcaacgccctttaaggatcagaagcgactt
tctgacagccagaaggacaagcaagctttgctggatttggcagagctcgctggagaaggc
atgacactgactcagtggaactatgtacccagcaaagccagcaacaaaacaggccgagaa
tcacctgtcagcgttacatgcagtggattcattccctcagaagaagaagtggaaagaaaa
gagagccagatccctgatgctaacaaaaacgcagtcatgactctgatggcagatttcatg
gagatggtgaataatcctcatctgagtgatgctcaacttcagactgactgtggggagatt
ctacatgtacacatgtttgtgttgtatgcccgctgccccctgcttgttgaggcggtacac
tctgaaggattctatgtagatgaagccagtacgggtcgtgtgagacgttttctgctcaat
gatgtgtctgctgatgctgctctctttttcctccgatttctgtactctgctaaaacagat
attcctagccactgcctaacacatgtttgtgaattggctcgtagatttggagtgaaaagt
ctcattgacacttgtgagcttttagtgaacatgcctcatgtatcagaagatgtggcaccc
acagaagaagaggaagatgatgatggaggggagagagaagaaaatttccaagagttatta
aagtccatgtggatagatgaagaagaagatgtctttgcagaccagaaggtggcagaaggt
cttgaagaagaggagaaagctgatgatggaccagttgaggaggtagatttggaggaagtc
tatgaatttgcagccactcagcgcaaaatgccagtggaacagagcacagaagctgaaagc
agcagtgaacctgaagttggatatcaagacaaggaacatgaccagtcttcttcaagcaga
agtcatacttctagagaagaacaggctatggatatagtgaatcatcactctgtggattgt
cacaattctttagcagtgtcttctgttcagaaggatgtgtcaggttcttctagtaagatg
tcacctgccagccttgagtcttctcctttaatacctccattagcttcctccccatcttgg
actaaaagtcatccagattctgtccattgtgcttccccttttcagtctccctccagaaat
cacagttccacaactacttctccaacccatcaactttttacagattctaatagagagcca
gtacaaagtccctcagctctgcttagggaatcctcttctgaagttgtccacaccatttca
ctcatctccccagacagggaggaagatcccgaggcagacttgtttagccagcacagcctt
aaacctctggatgatagctacgaccgtatgttttcagagacatgtggcgactatgcagaa
ccttcaggattttgcaacgcaagctcccgtgtgcatgcagatgcttctcaccatgagcca
cctgttcttacaagctcaccttctgtcattcaacatcccattcttccagaacttggatct
tcacctaacatccggcctcaaactcagtcctttttaggacactcatctcattctgctctt
gagaatggaaattctccagtctcttttggtagagattctaaacatagcgaacctactcag
aattctgtcaatgtttctgctacggctgtgtcccaggaacaagacattatcttgatcttg
tcctctgatgaagagacagagggcagttctcaagctgcaaaagttaaagcacctagcaat
aggtttgatatattcacaagcattaaagaatctccagctagctttagtattatgaaaaac
agtgaaggacattcactcctagataaaagcagcagttcagaaatgtcttggttggtacct
gctacaccagcaccacatccagcagagacgggactttcattgcttaaagcatctcatata
cctcagtcaccccaatccaaagcaggaaaccatgatgatactctgaaggacttggtatca
ccaactcagaggaccacctttgtcaatgtgagtttgaatacaactaagacgtctacatta
gcaagtagagcccaattcccaaacacacctaaaaagatcacagagtcttgcactagcaca
gatagcaaggtttcctgtgtccacgcttcaccaatgtcctccatatctaacagtactgtg
tttgaagtggtagaaagtgaagaggagggggcagtggcagaaccccaagctgatattagt
gcttatagcttccagatggattatgatgagccacccatacccattgatgatgatttgtgg
ttaaatgcccaggagagtcctgcaaagccctactctaccccagcacacaatgcttctttt
cacattgacataacaccaactaagggcccagaaacctcctccagcacatctgctctacag
gaaaaagactgtgagcctgataacagtgaggactctcctggcaagccttcttcacagatc
aaggaatcaagctacctcaactccaagctgtgggatgagtgggaggaagaagatcctgag
ctgcctgtctttctgccattgtctcagcggctcaataacgtcccagatgttcaaaaattg
ctgaagaccccagtttcaattgtgcgcaaaagagaactgcctccaaaggttgcaatcact
ccactaccagattattcagacatggacaccccagttttgaagaaagagttaaataagttt
ggcgtgagggcacttcctaagaagcagatggtgctgaagctaaaagaaatattcatgtac
acacatcaggtcatgagctccgattctgaagatgacatgcctgtatctcagcgtagccga
cgaaatataatgaatgaggtccagggtgagccattgcctgcacccaaaaaacaaaaagct
gcaaccacttctacaactaccagcatttccctgacacaggggaggaagactacatcaact
gcgtgtgcagcacaagatacagacagtggagatgatcagccaccaacagcatcacaggag
tctacaacatcctctgttggtgccagtgacacctcttctacgtcccacaggtaa
DBGET
integrated database retrieval system
