Pyxicephalus adspersus (African bullfrog): 140336563
Help
Entry
140336563 CDS
T11284
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140336563 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140336563 (SMG7)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140336563 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
140336563 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
140336563
NCBI-ProteinID:
XP_072275862
LinkDB
All DBs
Position
8:complement(22933210..22977035)
Genome browser
AA seq
1194 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKPGTAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQMHCGTVVKPQSRSCAYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEV
KKRWGVSDFIKAFIKFHGHVYLTKNLDKVSPLREQLEEQFKNMLFQKAFNAQQLVHITVI
NLFQLHHLRSFGTEAEQQSFSTEEELCWSQLLALFMSFLGILCRSPLKTHHCDDTSCADP
LPAIKVSLDWMKLRPSVFQEAAVEERQYVWPWLISLLNSFHVLEEDLTNANMLPLPEEFE
LQGFLALRPAFRNLDFSRGHQAIIGDRETQHRRMRPVRLVSLGKWICENQPRLMQCRSID
GKIVFSTDIPELMIEEPDDVEDRSSPQDNKHADIQRSEGSPGLKSVLSTGRSMSCESSEK
PVVTFKENIKPQEVNRELPARSYSRTVNAGKEQRDYTKGMNPSGNKKDNNNKRKNEPKKV
TAADKIQEPAKQSIAVQVKTPVSEARKTPVTPTSSPSTNTQFIPIHHPGAFPPLPSRPGF
PPPAYVIPPPVAFTMSSGYTFPPGVNVPGSFLQPSSHSAAGNQGPPGKQSHIPYSQQRPS
GPGTPNQGALGNQLSGQPQVQAPSSSPTQPNNQTATQLQIQVMAQQQQSPTKPIQTLGKN
PLHHSNLQQYPQAADTSKQLWNNPQVSNSLGKLMPQSMKQNYFMDGRLPSEPLSMLEQCL
QHPVMQQPLEKKVKPFPMDTFNQGSAEMKISDFYWGDQSSYSLNDNRSLLAQQSINNQRS
QRQPTGYRTGQDAVTRMPFEEPKRSPLLPPDLLKSLAALEEEEELAFSSPPDLYPALLGP
LATLPGRSLFKSLLEKPSELISQPPSFLSLTGFSLSQERFPSNSVFNEVYGKPPCSTKPE
SCPPIGQQETSLYSLFEGKPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHTSQH
FSNFGPIGTPDNRDRRVADRWKSDKPAMGGFGLDYLSVAPSTENSWRQVNNSSSANAWAA
QGNTREDSSAALMESLKSIWSTTMMHPGPSALEQLLMQQKEKQQRGHGSLNPPH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgtgcgcagtatctccggcaggctgaagtcctgaaagcagatatgaca
gattccaagcctggtacagcagaggcgtggacatcacgtcaggcactgcaagacttgtat
cagaagatgctcgttacagacctcgagtatgcactggacaagaaggtggaacaggacctt
tggaatcatgctttcaaaaatcaaatcacaacactgcaagggcaggccaaaaaccgagca
aatccaaatcgtagcgaggtgcaggccaatctttcactgtttctggaggcagctagtgga
ttttatacacagcttttgcaggagttatgcactgtgtttaatgtggatttgccatgtcgt
gtcaagtcctcccagctgggaatcatcagcaataagcagatgcactgtgggacggtggtg
aagcctcagtccagatcctgtgcttatatttgccagcactgcctggtacaccttggagac
attgctcgctataggaatcaaacaagccaggctgaatcctattatagacatgctgctcaa
cttgtcccttccaatggtcagccttataatcagctggccattcttgcctcctcaaagggg
gatcatctgaccactattttttactactgccgcagcatcgctgttaaatttcctttccca
gcggcttccaccaacttacagaaggcactctccaaagctttggaaagtcgtgaggaggtg
aagaaacgctggggtgtctctgattttatcaaggctttcattaagttccatggacatgtg
tacctaacaaagaatctggataaagtgagccctttgcgagagcagctggaggagcagttc
aagaatatgctctttcagaaagcctttaatgcgcaacagttggttcacatcacagtgata
aacctgtttcagctgcaccacttgcggagtttcggcacagaggccgagcaacagagcttt
agcacagaagaggaactttgctggtcccagcttctggctctctttatgtcgttcctaggt
atcctttgcagaagcccattaaagacccaccactgtgatgatacatcctgtgccgatcca
cttcctgctatcaaggtgtcgctggactggatgaaactgcgtcctagtgtattccaggaa
gctgccgtggaggaaagacagtatgtgtggccatggctgatttccctattaaacagtttt
catgtactcgaggaagacctaaccaatgccaacatgttgccacttccagaggaatttgag
ctgcagggattccttgctcttcgacctgcatttaggaaccttgatttctccagaggtcat
caagccattattggagatcgagagacccagcatcgtcgaatgagaccagtacgtcttgta
tcattggggaaatggatttgcgaaaaccagccacggcttatgcagtgtcgcagcattgat
ggaaaaatagttttttctacggatatcccagaattaatgatagaagaaccagatgatgtt
gaggacaggtcctctccccaggacaacaaacatgcagatattcaaagatctgaagggagc
cccggtttaaaatctgtactgtccactgggcgtagcatgagctgcgaatcctctgaaaag
ccagtggtgacttttaaagagaacattaaaccacaggaagtaaaccgggaattgccagca
cgtagttactccagaacagtaaatgctggcaaggaacaaagagactataccaagggcatg
aacccgtcaggtaacaagaaagacaataacaacaaaaggaagaatgagcctaagaaagta
actgctgctgacaaaatccaggaacctgcaaaacagagcattgctgtgcaggtgaaaact
ccagtctctgaggcaagaaagactccagtgactcccacatctagtcctagcaccaataca
cagttcatacctatccatcatcctggagccttcccacctctgcctagccggcctggtttt
cctccacctgcctacgtcattccaccacctgtggcattcaccatgagttctgggtatacc
ttccctcctggagtcaatgttccaggatcctttttgcaaccttcatctcactcagctgct
ggaaaccaaggtccacctgggaaacaatcccacattccttacagtcagcagcgtccttca
ggtccagggacaccaaaccaaggggcacttggcaaccagctctcaggccagccacaagtg
caggctccgtccagttctcctacccagcccaacaatcagactgcaacacagctacagatt
caagtaatggctcagcagcagcagtctcctaccaaacctatacaaacactgggcaagaac
cccctacatcactccaatcttcagcagtacccacaggcagcagacacttccaagcagcta
tggaacaatcctcaagtctcaaactcattgggaaaattaatgccacaatccatgaagcag
aactacttcatggatggccgtttgcccagtgaacctctgagtatgctggagcagtgtctg
cagcaccctgtcatgcagcagcctctggagaagaaggtaaagccttttcccatggatacc
tttaaccagggttctgccgaaatgaagatttcagacttctactggggggaccaaagctcc
tacagcctaaatgataaccggagcctccttgcacagcagtctattaataaccaaaggagc
cagcgccagcctactggctatcgtacaggccaggatgcagtgactagaatgccatttgag
gaacccaagcgttcccctctcctgcccccggacctgttaaagagtctggctgctctagag
gaggaggaagagctggctttctcctctcctcctgacctgtacccagctctgctcggccct
ctggccactctccctggacgaagcctctttaagtctcttctggaaaagccatctgagctg
atatcccagcccccctctttcctctcgctcactggattttcactgagccaggagagattc
ccaagtaacagcgtgtttaacgaggtctatggcaagccaccatgcagtacaaaaccggag
tcatgtcctcctattggacagcaagagacgtctctttactctctctttgagggtaaaccg
tggtccccatctcttccagcaagctcggatcactctacaccagccagccagtctcctcac
tcttctaatccaagcagtttgcccagctctccaccaacccataatcacacctcccagcac
ttttccaactttgggcctattggaaccccagacaacagagatcgccgagtagctgacagg
tggaagagcgacaaaccagcaatgggaggctttggactggactacctatctgtggcccca
tccacagagaacagttggcgccaagtgaataattccagcagcgctaatgcttgggcagcc
cagggcaataccagagaggactcatcggctgccctgatggaaagcttaaagtccatttgg
tcaaccacgatgatgcacccaggcccgtcagcccttgagcagctcctgatgcagcaaaaa
gaaaagcagcagagagggcatggatcattgaaccctccacactga
DBGET
integrated database retrieval system
