Pyxicephalus adspersus (African bullfrog): 140338365
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Entry
140338365 CDS
T11284
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140338365 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pads03041
]
140338365 (DHX38)
Enzymes [BR:
pads01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140338365 (DHX38)
Spliceosome [BR:
pads03041
]
Complex C
Other components
Step II factors
140338365 (DHX38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
nSTAND_NTPase5
SRP54
Sigma54_activ_2
AAA_7
AAA_30
AAA_16
Motif
Other DBs
NCBI-GeneID:
140338365
NCBI-ProteinID:
XP_072278663
LinkDB
All DBs
Position
9:complement(11219031..11239490)
Genome browser
AA seq
1243 aa
AA seq
DB search
MHFNCQLNSSLCVNPAKFLLTGVLKSVLRISNMEDDASLFRLEGTNASVQEGGLVLKKKS
SSNEQHVFKAPAPRSSLLGLDLLAAQKRKEREEKERQEGEKKVKSSSDWEDRDKNSEGSR
DRVSRGSHGDRHYRTARVETPTYTGGVNEEFLARSRQRERDRREHGVYASSKDDRRRKER
SSRDRDDRSHRSSRSDRDRSEQDSGSERRRSEPDSPRHKPRDSSTPSRSGWEEDDSGYGS
SRRSHWESPSPSPSHRDYDRSHRSERESSRRDRSIRISYTEESPLPTPSYKFNEWASERR
HLGSTPRLSLGKGKQDTDEERISFTSEDDQRQWEEDQRQADREWYMMDEGFDEFQNSLAS
ISEKYMRKREQQLHKQTHKRVSAQRQQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNA
AKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVRDPTSDMAIISRKGSQLVRKHREQKERKK
AQHKHWELAGTKLGDLMGVKKQEEESGKPMAEDGSVDYRAEQKFADHMKERNEASSEFSK
KKTLMEQRQFLPIFAVRQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIA
CTQPRRVAAMSVAKRVSEEMEVSLGEEVGYAIRFEDCTSEKTLIKYMTDGILLRESLREA
DLDHYSAVIMDEAHERSLNTDVLFGLLREVVTRRSDLKLIVTSATMDAEKFANFFGNVPI
FHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGTPGDILIFMPGQEDIEVTSDQII
ERLEELESAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVI
DSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLCT
TVPEIQRTNLSNVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGSLTS
TGRLMVEFPLDPALSKMLIVSCDMRCSAEILIVVSMLSVPAIFYRPKGREEESDQVREKF
AVPESDHLTYLNVFLQWKNNNYSSGWCNQHFIHAKAMRKVREVRAQLKDIMVSQRMSLSS
CGSDWDVVRKCICAAYFHQAARLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHE
LVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENKRRAKEEVSAMEEEMMLAEE
QLRARKEEQDKKSTLSSTRSVKIYTPGRKEVGTPRHTPARFGL
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgcacttcaattgtcaattgaacagcagcctatgcgtgaaccccgcaaagtttctacta
acaggtgtactgaagagtgtactacgcatcagcaacatggaggacgatgcttcactgttc
aggttggagggaactaatgcttctgtccaggaaggaggactggtgttaaagaaaaagagt
tcgagcaatgagcagcatgtttttaaagcccctgctccacgctcttcattactgggccta
gatctgttggctgctcagaaaagaaaggagcgagaggaaaaggagcgtcaggaaggggag
aagaaagttaaaagttctagtgactgggaggatcgagataagaactctgaaggatccagg
gacagggtcagccggggaagtcatggggatagacattacagaacagctcgtgtagagacg
ccgacttacactggcggggtaaatgaggaatttctggctcgaagtcgccaaagggaacgg
gataggagggaacatggtgtctatgcttcatccaaggatgaccggcggcggaaggaacgt
agtagtcgagaccgagatgaccgcagtcatcgtagcagcaggtcggatcgtgatcgctca
gagcaggacagtggatcagagagacgacgtagcgaacctgactcacctaggcacaaaccc
agagattcctcaactccctctcgctctgggtgggaggaggatgacagtggatatgggagt
tctagacgctctcattgggagtcaccctctccatcaccatcacacagagactatgatcgg
agccaccgcagtgagagggagagttccaggagagaccggtcaataaggatcagctacaca
gaggaatcgcccctcccaactccatcgtacaaatttaatgaatgggcttctgagaggcga
catttgggatccaccccacggctctctctgggtaaaggaaagcaggacactgatgaagag
agaatctcttttacctcagaagatgaccaaaggcagtgggaagaggatcaaaggcaagct
gatagagagtggtacatgatggatgagggttttgatgaatttcaaaattctctagcttct
atctctgagaaatacatgcgcaagagggaacagcagcttcacaagcagactcacaagagg
gtttctgctcagaggcaacagattaatgaggacaatgagcggtgggaaacaaaccgcatg
ctaacgagtggggtggttcagaggttggaagtggatgaggactttgaagaggacaatgcc
gctaaagtgcatttgctggtccataacttggtgcccccttttcttgatggtagaattgtc
tttacaaagcagcctgagccggtaattccagtacgggatccaacctctgacatggcaatc
atttctcgcaaaggcagccagctagtgcgcaaacatcgtgagcagaaagaaagaaaaaag
gcacagcacaaacactgggagttggctgggaccaaacttggagatctaatgggagtgaaa
aagcaggaggaggagagcggcaagccaatggctgaagatggctcagtagattacagggca
gagcagaaatttgcagatcacatgaaagagcgcaatgaggcaagcagtgaattttccaag
aagaagactctgatggagcagcggcagtttttgcccatttttgctgtccggcaggagctg
ctcacaataatcagagataacagcatagtcattgttgttggagaaacaggcagcgggaag
acaacacagctcacccaatacttgcatgaggatggctacacagactatggcatgatagct
tgcactcagccacgtagagtggctgccatgtctgtggcaaagagagtaagtgaagagatg
gaagtgagcctgggggaggaggttggctatgccattcggtttgaggactgcacatcagag
aagaccctcattaaatatatgactgatggtattctcttgagagaatctctacgtgaggct
gacctggaccactacagcgctgtcatcatggatgaagctcatgagcgatcactaaacaca
gatgtactgtttggccttctaagagaggttgtcacccggcggtcagatctaaagctgatt
gtcacttcagccacaatggatgctgagaaatttgccaatttttttggtaatgtccccatt
ttccacattcctgggaggacgtttcctgtggatattctgttcagcaaaacaccgcaggag
gattatgtggaggctgctgtaaagcaggcactgcagatccatctttctggaactccagga
gacatactgatcttcatgcccggtcaggaagacattgaggtgacatcagatcagattatt
gaaagactagaagagctggagagtgcccctcctctggctgtgttgccaatctactcccag
cttccttcagatctccaagccaagatcttccaaaaggctccagatggagttagaaaatgc
attgtcgccactaacattgctgaaacctcactgactgtggatggaatcatgtttgttata
gattctggatattgcaagttaaaggtatttaacccacgcataggtatggatgctttacag
atttatcccatcagtcaggccaatgctaaccagcgttctggtagagctggtaggacgggt
ccagggcagtgctttaggctctacacacagagcgcctacaagaacgagctgctgtgcact
acagtgcctgaaatccagcgcactaacctgtccaatgtggtcctgcttttaaaatccctg
ggagttcaagaccttctcctcttccacttcatggacccaccgccagaggacaacatgctc
aactctatgtaccagctgtggattttgggggccctggataacactggctcacttacctct
actggacgcctcatggttgagtttccactggatccagctctatctaagatgttgattgta
tcctgtgatatgcgttgcagtgctgaaattcttattgtggtatccatgttgtccgtgcca
gcaattttttaccgacctaagggacgtgaagaagagagcgatcaagtcagagaaaaattt
gctgttccggaaagtgatcacctgacttatctgaatgtctttctacagtggaagaacaat
aactactccagtggctggtgcaaccagcattttatccatgctaaggccatgaggaaggta
cgagaggttcgtgctcagctgaaagacatcatggtatctcagcgcatgtctctgtcatcc
tgtggatcagactgggatgtggtccggaaatgtatttgtgcagcttatttccatcaggct
gcccgactaaagggaatcggcgaatatgtgaatgtacgaacggggatgccctgtcacctc
cacccaaccagctcactatttggtatggggtacaccccggactatattgtttaccatgag
ctggtgatgactactaaggaatacatgcaatgtgtcacagcggtggatggagaatggcta
gcagagctcggacctatgttctacagtatcaagcatgctgggaagtccagacaggagaac
aaacgcagggcaaaggaagaagtgtcggccatggaggaagagatgatgctggcggaggaa
caacttcgagcaaggaaagaggagcaagacaagaaaagcacactcagcagtaccaggtct
gttaagatttacacaccgggaaggaaagaagtcgggacccctcgccacacccctgcacga
tttggcctgtga
DBGET
integrated database retrieval system
