Pyxicephalus adspersus (African bullfrog): 140338745
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Entry
140338745 CDS
T11284
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140338745 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140338745 (EDC4)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140338745 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
140338745 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
CelTOS
EIF3I
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
140338745
NCBI-ProteinID:
XP_072279188
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All DBs
Position
9:31182244..31438604
Genome browser
AA seq
1339 aa
AA seq
DB search
MAQRNGYTFADIQKKTCFNGNMNGFLAIDQTEALNVDAVDKTLQDPDLRTAGMVPFSNKQ
VIFLSGDDSSTSIEVTGKDVEIVASSDSNICSKARGSNKVKIQPVAKYDWEQKYYYGSLI
AVSNAYLAYATRGSNGSAMIRVLSVTTADRILLKGITGSVTDLAFAHLNSNQLACLDEAG
NLFVWRVKMEGEKIQDELFVHIQRSDQTTLNTHRRIIWCPYIPEENEEIPAEDGSQTIAL
LHEDRAEVWDLEIVQTNHTSCPTDVSDIKEGFIVVKGHSGRLSEGALSPDGTVLATASHD
GFVKFWQIYIEGLDQPRCLHEWKPHSGRPVSCLLFCDNHKKQDPEVPFWRFLITGADQNR
ELKMWCTVSWTCLQTICFSPDPFSSSVLPGLKVSLDLSAEFLILTDVQRKVLYVMELQQN
QEDGRAAFTSISEFLLTHPVLSFGIKDVCRHIRHSEVLLSEAENDNPGAAEESLDSDEGD
DSTAVLIKLFCVHTKALQDVQIRFKAHQYSQSDSLKGTHEDFVSQDEMTDITQEKRPPNQ
PLHGSQSDSLRNSTDFLLRSNDSKPKLMTPDAFMTPSVQAQQVVSSAGSSISSLTSVTAM
SSASIDTAVSRLPDEIKHSPILQLDNSITLGSNLHSGNFPVSPRTTAVLIPGLCEKAIHN
PIVQVTPSSIPLELQSLEPSLASQASPTRERSPDVISSASTAVSQDIPEIASETLQRSYP
APISLGLTPEDTDTNHAPSMSSAASALHLLSNHNCNVPEHGHQPLETGSSGAQDEMVSHE
TVVARSIQDKVDESISQPWPAAPDITRETRNNLTESDHDDEVASLATAINSFGGKGQSPR
LLVKEWQTSISSNSSPSSGIKSVKDNKHLIQTFKVPAQQFSFQTSSQQHEELMALLYNQQ
RELSELRQNQQDLMQRLTDHLDATQSSIVGHVERVIDTQQAQEQRRLDRILSDGQQRNGQ
LQEYLSQQLSHSLSNRLDKTIREEIKKTVPQCITKTLEPVTGQLSSTIAAKFTSVEGTVK
ESVTKMVKSKNITDAIGRAVAESLQTPIQTAYREAFQSVVLPAFEKGCQSMFQQINGSFR
QGTQEYMQQMETHLKNRKVQEQETYEPILTQLQQLTESLQTTTDQLSSNLTSSMRSEVQH
QLHVAVGNMQDSILNHVQRIIKEEVSLAMKEQQAAVTSSIMHAMRSAAGTPIPSSHFDFQ
SQQTHILQLLQQGHLNQAFQQALTASDLNLILYVCETVDSQQVFGQHPCQLTQPVLLSLI
QQLSFDLGSRTELKLNYLEEAVMHLDHSDPVTRDHMGSVMTQVRQKLFQFLQVEPHNPLQ
KPARRLMIMLQGLVTPNMS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaaggaacggatatacttttgcggacatccagaaaaagacgtgtttcaatgga
aatatgaatggttttcttgcaattgatcagactgaagctttaaatgtagacgccgtagac
aagactttgcaagatccagatctcagaactgccggcatggtgcccttctccaacaaacaa
gttatctttctttctggagatgattcttctacttcaatagaggttacaggaaaagatgta
gaaatagtagctagtagtgactccaatatctgcagtaaagcaaggggcagtaataaggtt
aaaatacaacctgtagcaaaatatgactgggaacagaagtactattatggcagtctcatt
gcagtgtccaatgcttaccttgcctatgccactagaggttctaatgggtcagctatgatt
cgtgtcctaagtgtcacaacagcagaccgaatactgctaaaaggtataacgggaagtgtt
acagacctggcgtttgctcacctgaactcaaaccagctagcttgtttggatgaagcagga
aatctttttgtttggcgagttaaaatggaaggtgaaaagatacaagatgaactttttgtt
cacatacaaagatcagatcagacaacgttaaatacgcatcgtagaattatttggtgcccc
tacattcctgaagaaaatgaggagataccagcagaggatggaagtcagactattgcttta
ttgcacgaagatcgggcggaagtgtgggatctggagatcgtacaaacaaaccatacctca
tgccctacagatgtcagtgatattaaggagggattcatagttgtgaaaggacattctggg
cgactaagtgaaggtgctctttctcctgatggaacagtcttggccacagctagccatgat
gggtttgtgaagttttggcagatatatattgaaggactagatcaaccaagatgtcttcat
gagtggaaaccacacagtggaagacctgtttcttgcttgcttttctgtgacaaccacaag
aaacaagacccagaagttccattttggagattcttaatcacaggagcagatcagaacaga
gagcttaaaatgtggtgcacagtctcatggacatgtctgcagactatatgtttttctcca
gacccgtttagctccagtgttttgcctgggttaaaagtctctctggatttgtctgcagaa
tttttgattctcactgatgttcagagaaaggttttatatgtaatggagttacagcagaac
caggaagatggcagggcagctttcacttcaatttcagaatttctgctgactcacccagtt
ttaagttttggaatcaaggatgtatgtcgtcatataagacattctgaagttctcttgtca
gaggcagaaaatgataaccctggtgcagcggaagaatcactggattctgatgaaggggat
gattccacagctgtgcttataaagcttttttgtgttcatacaaaggcattgcaagatgta
cagatcaggtttaaagcacaccagtactcacaaagtgattctttaaaaggcacacatgaa
gattttgtttctcaagatgaaatgacagacatcacgcaagagaaaaggccacctaaccag
cccttacatgggtcacaaagtgatagtcttagaaattcaacagatttccttttgcgttca
aatgactctaagccgaagcttatgactcctgatgcatttatgacacccagtgtccaagct
caacaggttgtctcttctgctggatccagtattagttccctgacttcagttacagctatg
agcagtgcctccatagatacagctgtctccagacttcctgatgaaattaaacatagtcca
atactacaacttgataacagcatcacattgggtagtaatctacatagtggcaattttccg
gtatctccaagaaccactgctgtacttattccaggactttgtgaaaaagccattcataac
ccaatagtacaggttacaccttcaagcattccgttggaactgcaaagcttggaaccttct
ttggcttcccaggcttcacctactcgtgaacgatccccagacgttatctcaagtgcttct
actgctgtgtctcaagatattcccgagattgcttccgagaccctgcaaagaagttaccca
gcaccaatatcattaggcctgacccctgaagatacagacacaaatcatgcaccaagcatg
agctctgcagcttctgccctacaccttctttcaaatcataactgtaatgtaccagagcat
gggcaccaaccattagaaactggatcttctggggctcaagatgaaatggttagtcatgag
actgtggtggcaagaagcattcaggataaagtagatgaatccatatcccagccttggcct
gcagcacccgacataacaagagagaccagaaataatttaactgaaagtgaccacgatgat
gaagtggccagtttggcaactgcaataaacagctttggaggaaaagggcagagtccaagg
ttgcttgtaaaggaatggcaaaccagcatatcttcaaattcttcacccagttctggcata
aaatctgttaaagataacaagcacctgatacagactttcaaagttccagcacaacagttt
tcttttcagacaagctcccaacaacatgaggaattgatggctcttctgtataatcaacaa
agggaactctctgaacttcggcagaatcagcaggatctcatgcagaggcttactgatcat
ttagatgcaactcaaagttccatcgtggggcatgtggaacgtgtcattgatacacaacaa
gcacaagaacaaagaagattggatcgcattttaagtgatggacagcaacgaaatggtcag
ctacaagaatatctttctcaacagctttcacattcactaagtaatcgtcttgataaaact
ataagagaagaaatcaaaaagactgttcctcagtgcataactaaaactttggaaccagta
actgggcagcttagcagcacaattgcagcaaaattcacttccgtggagggaacagtaaag
gagagtgttacaaagatggtcaaatccaagaatattactgatgccatcggtagagcagtt
gcagaatctcttcaaacaccaattcagactgcatacagagaagcttttcagagtgttgtc
cttccggcatttgagaaagggtgccaatctatgtttcagcaaataaacggaagcttccga
caagggacacaagagtatatgcagcagatggagactcatctgaaaaacagaaaagtacag
gagcaagaaacatatgagccaattttgacacaacttcagcaacttacagaatcacttcag
acaacaacggaccaactgtcttctaatttgactagcagtatgaggtcagaagtccaacat
cagctacatgtagctgtgggaaacatgcaggactctattctgaaccatgtccaaaggata
ataaaggaagaagtaagccttgctatgaaggaacaacaagcagcagtcacttcaagtatt
atgcatgcaatgcgatctgctgctgggactccaataccatcttcacattttgactttcaa
tcacaacagacacacatattgcaacttctgcagcaaggccacctaaaccaagctttccaa
caggccctaacagcttcagacttgaaccttatcctgtatgtttgtgaaacagtggattcc
caacaagtgtttgggcagcacccatgtcaacttactcagcctgtccttctatctctcatc
cagcagctgtcttttgatcttggcagtcgtactgagctcaaactaaactacttagaagaa
gcagtgatgcatctggatcacagtgaccctgtaactagagatcacatgggaagtgtgatg
actcaagtgcggcagaaattgttccagttcctacaagtagagcctcacaaccctttacag
aagccagctcggcgactaatgattatgttacaagggttggtcacgccaaatatgagttag
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