Pyxicephalus adspersus (African bullfrog): 140339217
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Entry
140339217 CDS
T11284
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140339217 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140339217 (PATL1)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140339217 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
140339217 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140339217
NCBI-ProteinID:
XP_072279901
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All DBs
Position
10:complement(53302705..53320976)
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AA seq
719 aa
AA seq
DB search
MMRFQSLEDGDAFPGLEEDEDIDQFNDDTFGAGAIDDDWREEHDRLAEMEEKHTGSHLLD
RNSSPITDPQQEELEHSLNQLVKEIEETSLRREPCTRISSGINSSIWDSDLGTIRGSLLA
EEMSTLSLLHEYGLAPVPPPNRNDTERDASERALPRRSTSPVIGSPPVRAVPIGTPPKHV
GPIFSQQQVLCPNAIHIRAASSFNSHPNNPAALLRHPFPSALSPLQRAQLLGGAQVAAGR
MSPSQFAHTAALHGPPIAGVAPKLLQGPMVTPGAGGFRPFFGVPPAAAPGAHLKNLRTPQ
QRQPLPFLSDTTHLHPQHKRLLHQRQQNRNQHQGLNGSGGNRLSRSNHTESRRRDPYAGL
MLQREKEWVCRIQLLQLQSTDPYHDDFYYQNYFEKLDKLSASQDNLREGPKKERTKLITP
QVAKLEHTYKPVQFEGSLGKLTISSVNNPRKMIDAVATHRSDEEETREKQVRDKKRQTLV
NIEKAFSVLLELEDFERRFSLCCGNEEREALTEERRLKLQQLCDILQGKEGSERAAEEQF
IQIMCIRKGKRLVARIIRLLPLQLSVALLSTIAHSLPFFIKKDYQDQILPCLINPCAHVI
SQLSAAALTTLLETVCGSGNSSPQQHLLSVLQNKFGLTLVCQILGRAEELMSSENSLTLN
QSLWAPLVAQVAHFLLQIQATSLAQPLCSPATALLHFSRYLDDQTVGQLRSKLRSSPSP
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgctttcagtcactcgaggatggagatgcctttccaggcctcgaggaagatgag
gatatcgaccagtttaatgatgatacttttggagcaggagcaattgatgacgattggcgg
gaagagcatgataggttggcagagatggaggagaagcatacaggctctcaccttttggat
agaaactcctcccccatcactgatccacagcaggaggaactggagcatagcctcaaccag
ctggtgaaagaaatcgaggagacatccctgcgaagggagccatgtacacggatatcttct
gggataaactccagtatatgggactctgacttgggaacaatcagaggttctttgcttgca
gaggaaatgagtacactatcattgttacatgagtatggcctagctccagtacctccacct
aaccgcaatgacacggagcgagatgcatcagaaagagctctgccccgccgttccacttct
ccagttattggaagcccccctgtgcgagctgttcccattgggactccaccaaagcatgtt
ggccccatattcagtcagcagcaggttttgtgcccaaatgctatccacattcgagctgcc
tcatctttcaacagccacccaaataacccagcagcgcttttgagacatccatttccttct
gccctctccccacttcagcgggcgcagctcctgggaggagcacaggtagctgctggccga
atgtcacccagccagtttgcccacactgctgccctacatgggcctcctatagctggtgtt
gcccccaagctactacagggtcccatggttaccccaggagctggggggtttcgacctttc
tttggtgttccccctgcagctgctccaggagctcatctaaagaacctaaggactccacag
caacggcaaccccttccgtttctttcagacactactcatcttcatccgcaacacaaacgt
ctgctacatcagcgccagcagaaccgcaaccagcatcaaggattaaatggcagtggaggc
aaccgcttgtcccgctccaaccatacagaatctcgtcggcgtgacccatatgcaggtcta
atgctgcaacgagaaaaggagtgggtgtgtcgtattcagcttctccagctgcagagcact
gatccctaccatgatgacttctactatcagaattactttgagaagttggataagctgtct
gccagtcaagacaatctgagagaaggccccaaaaaagagaggacgaagctgatcacgcca
caagtagccaaactggagcacacctacaaaccagtgcaatttgaaggctctcttgggaag
ctgactatttccagtgtgaacaaccctcgtaagatgattgatgctgtggctacacatcgt
tctgatgaagaggaaacccgggagaaacaagtgagagacaagaaacgtcaaaccctagtg
aatattgagaaggcgttctctgtcttgttggagttggaagactttgagcggcgtttttcc
ttgtgctgtggaaacgaagagagagaggctttgacagaagaacgcaggctcaagctgcaa
caactctgtgatatcctgcaaggcaaggaaggaagtgaacgagcagctgaggagcagttt
atacagatcatgtgcatcaggaagggaaaacgactggtggctcgaatcatccgcttgttg
ccgcttcagctaagcgtagctttattatctaccattgcacacagcttgcctttctttatc
aagaaggattatcaagaccagatacttccctgcctgatcaacccctgtgcccatgtgatt
agccagctgtctgctgctgctctcacaacccttttagagacagtctgcggctctggaaat
tcttccccccagcagcatttgttatctgttctacagaacaagtttggactgacgctagtg
tgccagattctgggaagagctgaagaactgatgagttctgaaaactcactgacactgaat
cagtcactctgggcaccattggttgcacaagttgctcactttctgctgcagattcaagcc
acatctttggctcagcctctctgctctccagcaacagctctgcttcacttctcacggtac
ctcgatgatcagactgttggtcaactgcggtctaagctcaggtcttctcccagtccatga
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