Pyxicephalus adspersus (African bullfrog): 140339721
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Entry
140339721 CDS
T11284
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pads Pyxicephalus adspersus (African bullfrog)
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pads03009
]
140339721 (PDCD11)
Ribosome biogenesis [BR:
pads03009
]
Eukaryotic type
90S particles
Other 90S particles
140339721 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_C
OB_RRP5_4th
TPR_14
OB_RRP5
TPR_19
ARM_TT21_N
TPR_16
TPR_15
ARM_TT21_5th
PPR
ARM_TT21
PPR_2
DUF7017
TPR_12
ANAPC3
HAT_Syf1_M
TPR_CcmH_CycH
Mad3_BUB1_I
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
140339721
NCBI-ProteinID:
XP_072280629
LinkDB
All DBs
Position
10:19641751..19672325
Genome browser
AA seq
1782 aa
AA seq
DB search
MEECFPRGGTLKKSEDTANKKRLREDDNLFSTFHEEEEDDSIRKKKKKELKETSKGPQYE
QTPFAKVKTVELLRFQDLSVGMLFLGCIREVKDFELVISLPYNLIGFVQATNICEAYTKL
LTEQVEKDKPLEGLIPLSDLYSPGMLVRCAVSNLEMTSSGFNSIKLSLNPKLVNVDLTPS
SLHTGMHLTGLVSSVEDHGYLIDLGIGGTKAFLPRQKAEIYITQTNKGIALKVGQYLNCV
IEEVKNKGRIVRLTVNQSDVVAAIATDEQKWTLNNLLPGLVVNAQIQKIFSDHITLSFLS
SYTGVVDFLHLEPKKAGLYQKDQLVKACILWIDRSSKIIRLTLRKTFLKPGKDVKQLSTN
LIGTVHENCTVKALYKNAGALFEVDGEVVAFALKYHLTANSTEVLNKYKVGTVHTGRVVG
FSPMDETVFLTFKAKIIEEMFWKHEDIQSGQLLEGTVHKIEKEGIIVSITKRMSGLVPNL
HMADVTLRHPEKRYPPGKKIKCRVLNVNPSAKKLILTRKKTMIDSDLPIIASFHDAKPGM
ITHGFIWAVKDFGCIVKFYNDVHGLAPARELSTQYIPSIQDAFYKGQVIKVRVLECNPEK
ETLLLSFRIVEETNDEQENGGRRKQLNLPELGKIVDVKVASKTDTELNVLILPEETPAIL
PKVHLSDHVTNCELLFHGLKEGDELNQVMCLNNSRGQTILTRKPALISFIEKGSSIKDFS
EVQVGMILPGFVKNIMSYGVFVEFMYGLVGLVPISEVSDKFVTNINDYFVQGQTVVAKVI
NIDEQKKRFLLTLKMSECAPDDCSAENFTRISKCFEELQFSKDLMKRNDEDEGETIFSLV
PGKKLILVVEKLEDNGLTLFNTRKVPGAQQISTVQHNKSEKSLVVGQKVKVVILHVDVLK
AHVYVSMEGTLLKKCQTNFTENSVHSAFVQYLAEEFAVVALKNTSKLVAIPLNRHFNDTY
RFESERLSLGQEISVTLLSVDSDEHGLPLAVQNTSSEKGKGRMQLNFASTKPTIGELVTG
IVKSVKPTNVLVSITDKLYGTIHASQIMENVPEGTRPTSKLKPKESVTCRVIGGREFKSH
KFLPITHPNLMQSLLELSVLPSLLNTEVGAVKQKLLNMYSKGEKVTCFVSKYNKLKECVE
LEISAGIRGKVERLLLSTSVNVLRHPEKQFKKGLAVSASVVKVNGTSKTLSLSLTDVYSL
TKGCITFGCVKGVIPSSGLLITLPFGRVGRASLFQLKDCLDDVSLENFTEGMFVKCCILS
TGTKVDVSLRESQINPGRVCKRIDEDMSSIDSLNEGQLVKGFVSAVTDKGVFFRISSTID
GHILFKNVTSYYVQEIEMYKKYIPLGKLYTAKIISIDKEKSHLEMSLLEKDTGHPDVISE
SAGFSLRWNNENKRKRTDSESEAKSFKKKKFKESKDDEDSGVEVYDREQETGNKEKDSNS
HSSAPRLQVTSGFSWDVNLNTLKTSLNNEKENSSDSEEDEEEQCKVQKTKGIQKQGAKKK
QAGKEATDASQRPQSVNEFERLVLSSPNISANWIQYMDFHLQATELEQARAVAERALETI
YFREEQEKLNVWVAMMNMENTYGTEETLLKVFERAIQYNDPLKAFQHLVDIYIKSEKFKE
ADELFNTMIKRFKQEKSVYWKYATFLLKQGQSEAAHRLLQRALKCLPEKEHVDVISKFAQ
LEFHLGDAVRAKALFESTLSSYPKRTDIWSVYIDMMVKHGNQTEVRDIFERVIHLSLAAK
RIKFFFKRYLDYEKKHGNEQTVQAVKEKALQYVESKSSVATS
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgtttccctcgtggggggaccctaaaaaagtctgaggatacagctaataaa
aagaggcttagagaggatgacaacttgttttctactttccatgaagaggaggaggatgac
tctattagaaagaaaaagaagaaagaactgaaagaaacttccaagggaccccagtatgaa
cagaccccgtttgcaaaagtgaaaacggtagagctgctgaggtttcaggacctcagtgtt
gggatgttgtttcttggatgcatcagagaagtcaaggattttgaactggttataagcttg
ccctacaatctcataggctttgttcaagcaactaatatctgtgaggcgtacacgaaattg
cttacggagcaagttgaaaaagacaagcctctagagggtctaatacctctttctgacttg
tattcaccgggaatgctggttagatgtgccgttagcaatttggagatgacatctagtggt
tttaatagcatcaaattgtccttaaacccaaaactcgtcaatgtggatctcactccatct
tctctgcacacaggcatgcacctcacaggtcttgtgtctagtgtggaagaccacggctat
ctgattgatttaggaattggtgggactaaagctttcctaccccgacagaaggctgaaatt
tatataacccaaacaaacaaaggaattgcattgaaagtagggcaatatctaaactgtgtg
attgaagaggtgaagaataaaggaagaatcgtgcgtctgacagtaaaccaatccgatgtg
gttgcagccattgccacagatgaacaaaaatggactttaaataacttgctgccgggctta
gtggtaaatgcccagattcaaaagattttcagtgaccatatcactttatcattcttgtca
tcctacacgggagtagtggatttcttgcatttggaacctaagaaagctggcctgtaccag
aaggatcagttagttaaagcttgcatcctgtggattgacagatcttccaaaatcatacga
ctgacattacgcaagaccttcctgaagccaggaaaggatgtgaagcagctgtccactaat
ttgattggcactgttcatgagaattgtacagtgaaagcactgtataagaatgcaggagca
ttgtttgaagtggacggagaagtggtggcttttgcacttaaataccatctgacggctaac
agtacagaagtcctgaataaatataaagtagggacagtccatactggacgggtggtgggg
ttcagccccatggatgagacagtttttcttacttttaaggcgaaaataattgaagagatg
ttttggaagcatgaagatatacaatctggacagcttctagagggaactgttcacaagatt
gaaaaagaaggaatcatagtgagtatcactaaacgcatgagtggtctcgtaccaaatctc
cacatggcagatgtcaccttacgtcatcctgagaagagataccctcctggcaagaaaatc
aaatgtcgggttctaaatgtaaatccatcagccaaaaagctgatccttacccgaaagaaa
accatgatcgattcagatttgccaataattgctagtttccatgatgcaaaacctggcatg
atcactcatggcttcatctgggcagtaaaagactttggatgcattgttaaattttataat
gatgttcatggacttgcaccagctcgagagttaagcacacagtatatcccttcaatacaa
gatgccttttataagggacaggtgataaaggttagggttctagaatgtaaccctgaaaag
gagacattgctgctgtcctttaggattgttgaagaaaccaatgatgaacaagaaaatgga
ggaagaagaaaacaattaaatttgccagaacttggaaagatagtagatgtgaaagttgca
agcaagactgatacagaactaaatgtactaattctgcctgaagagacccctgcaattctc
cctaaagttcacctgtccgaccatgtgacaaactgtgagctcctcttccatggtttaaag
gagggcgatgagttaaatcaagtgatgtgtctaaacaactccagagggcaaactatatta
accagaaaacctgcattaatttcattcatagagaaggggtcctctataaaagatttctct
gaagttcaggttggaatgattctccctggctttgttaaaaatatcatgtcatacggagtg
tttgtagagttcatgtatgggctcgttggacttgtccccatctcggaagtcagcgacaag
tttgtgactaacatcaatgactattttgtgcaaggtcagacagtagttgctaaggttata
aatatcgatgagcaaaaaaagcgctttttgttgaccctcaagatgtccgagtgcgcccct
gatgactgctctgctgagaacttcacccgaatcagcaagtgttttgaagagttgcagttt
tctaaagatctaatgaaaagaaatgatgaggatgagggagagacaatcttttctctagta
cccgggaaaaagttaatccttgttgtcgaaaaactggaagacaatggtttgactctgttc
aacactcgcaaggtccctggagcccagcaaatatcaactgtgcaacacaacaagagcgaa
aaatctttagtagtgggacagaaagtaaaggttgtgattctacacgttgatgtgttaaaa
gctcatgtttatgtctccatggaaggaactttattaaagaaatgtcaaacaaattttaca
gaaaattcagtacattcagcgttcgtacagtatttggcggaagaatttgcagtggtggct
ttaaaaaatacttcaaagctcgtggctatcccacttaacagacattttaatgacacttac
cgttttgagtcagaaaggctaagtctaggacaagaaatctcagtgacgttattatcagtg
gactctgatgaacatggactcccactggcagtgcagaataccagctcagaaaaaggaaag
ggcaggatgcagctaaactttgcaagtacaaagccaactattggagaactggttaccggg
attgtgaaaagtgtcaaacctaccaatgtgttggtgtcaattacggataaactatatggc
accatccatgcttctcagataatggagaatgttcctgaaggtaccaggcctacatccaag
ctcaagcctaaggagagcgtcacatgccgtgtgataggaggacgcgaatttaagtcacac
aagttccttcctattactcacccaaacctgatgcagtcacttcttgaactcagtgttctt
cctagtcttttgaatacagaagttggagctgtaaaacaaaaactcttgaatatgtactca
aagggtgaaaaggtgacctgctttgtatcaaagtataacaaattaaaggaatgtgtggag
ctggaaatttctgccggcattcgtggcaaagtggaacgtctgcttctatcaacttctgtt
aatgtcttgaggcatccggagaaacaattcaagaaaggcctggcggtgtctgccagtgtg
gttaaagtgaatggcactagtaaaacactctccttgtcattgacagacgtttactctttg
acaaagggttgtatcacttttggctgtgtaaagggtgtaattcctagttcaggcctactg
ataacattaccatttggaagggtcggaagagctagtttattccagttaaaggactgctta
gatgatgtctccctggagaacttcaccgaaggaatgtttgtaaagtgttgcatactttct
actggaactaaagtagatgtgtcactaagagagtctcaaataaatcctggacgtgtctgc
aaacggatagatgaagacatgagctctattgactctctgaatgaaggacagttggttaaa
ggttttgtcagtgcagttacagacaaaggagtgtttttcaggatatccagcacaattgat
ggccatattctgttcaagaatgtcacttcgtattatgttcaagagatcgagatgtataaa
aaatacattccactaggaaagttatatactgccaagattatttctatagataaagagaaa
agtcacttagagatgtcacttcttgaaaaggatactggacatcctgatgttatttcagag
tccgctggcttcagcctaaggtggaacaatgaaaataaaagaaagcggacagattctgaa
agtgaagccaagagcttcaaaaagaagaaattcaaggagtcaaaggatgatgaagacagt
ggagttgaggtttatgatcgagagcaggagacaggaaataaagaaaaggactctaacagt
cattcttcagcacctcggctgcaggttacctctggcttttcttgggatgtcaacctgaat
accctcaaaacttctttaaataatgagaaggagaacagctcggacagtgaggaagatgaa
gaggagcagtgcaaggtacagaagacaaagggcatccagaaacagggggcgaagaagaaa
caagctggaaaagaggccacagatgcaagtcagcgaccacagtcggttaatgaatttgag
cgccttgtactcagctcgcctaacatatctgctaactggattcagtacatggatttccat
ctccaagccacagagctggagcaagcacgggctgtggcagaaagagccctggagaccatt
tatttcagagaggagcaggaaaagcttaacgtttgggtggccatgatgaatatggagaat
acatatggcacagaagagactcttctaaaggtgtttgaacgagccattcaatacaatgat
ccactcaaagcattccaacacttggtggatatttacatcaagtcagaaaagtttaaggaa
gctgatgagctgttcaacactatgattaagcgtttcaaacaggaaaagtctgtttattgg
aaatacgccacttttcttctaaagcaaggccagtccgaggctgcccatcgcttactgcag
cgagcactgaaatgtcttccagaaaaagagcatgttgatgttatttcaaagtttgcccag
ttagagttccacctgggtgatgcagtacgagccaaggctttgtttgaaagcacgctgagc
agctatccgaaacgcacagacatctggtctgtatatatcgacatgatggtaaagcatgga
aaccaaacagaagtcagggatatatttgagcgcgttatccaccttagtttagcagcaaaa
aggataaaatttttcttcaagcgttatctcgactatgagaagaaacatggcaatgagcaa
accgttcaagctgttaaggagaaggctctccagtatgttgaatccaagagttctgtggcc
acaagctag
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