Pyxicephalus adspersus (African bullfrog): 140343846
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Entry
140343846 CDS
T11284
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03013
Nucleocytoplasmic transport
pads03015
mRNA surveillance pathway
pads03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140343846 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
140343846 (DDX39B)
03015 mRNA surveillance pathway
140343846 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140343846 (DDX39B)
03041 Spliceosome [BR:
pads03041
]
140343846 (DDX39B)
Enzymes [BR:
pads01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140343846 (DDX39B)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140343846 (DDX39B)
Spliceosome [BR:
pads03041
]
Complex C
Other components
EJC/TREX
140343846 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140343846 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140343846
NCBI-ProteinID:
XP_072286842
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All DBs
Position
Z:complement(10808089..10828259)
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AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQTGGDAQDLPTKKEVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPAVKVAVFFGGLLIKKDEETLKKSCPHIVVGTPGRILALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEQDAKILNEVQDRFEVNISELPDEIDI
TSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacagatgtggacaatgagctgttggactatgaggatgacgaggtggataac
cagactgggggtgatgcgcaagaccttccgaccaagaaggaggtgaagggatcctacgtg
tccatacacagctctggcttcagagatttcctccttaaacccgaactgcttcgtgccatt
gtggattgtggattcgagcatccgtcagaagtacaacacgagtgcatcccacaggccatc
cttggcatggatatcctgtgccaggcaaagtctggcatggggaaaactgcagtgtttgtc
ttggccacacttcagcagctggagcctgttacagggcaggtctccgtgttagtcatgtgt
cacaccagagaactggcgtttcagatcagcaaagagtatgaaagattctccaagtacatg
ccggctgtaaaggtggcagtgtttttcggtggacttttaattaagaaagatgaggagact
ctgaagaaaagctgcccgcacatcgtagttggaactcctggacgaatcctagcacttgca
agaaacaagactctgaacctgaaacacatcaaacactttatcctggatgaatgtgacaaa
atgttagagcagctagatatgcgcagagatgtccaggaaattttccgtatgactcctcat
gagaagcaagtcatgatgttcagcgctactctgagcaaggagattcgcccagtgtgccgc
aagttcatgcaagatccaatggaaatctttgtggatgacgagaccaagctgactctccac
ggacttcagcaatattacgtcaagctaaaggataatgagaaaaaccgcaaactttttgac
ctcctggatctgttggagtttaaccaggtggtcatctttgtgaagtcggttcagcgatgc
atcgccctggctcagttgttggtggaacaaaacttcccagctatcgctattcatcgcggg
atgcagcaagaagagagactgtcccgttaccagcaattcaaggatttccagcgcaggatc
ctggttgctacaaatctctttggccgtggcatggacatcgagagagtgaacatcgccttc
aattatgacatgccagaagactcagatacctacctgcacagggtagcacgtgccggtagg
tttggaacaaaggggctggccatcacctttgtttcagacgaacaggatgcaaagatccta
aatgaggtgcaagatcggtttgaggtgaacattagcgaattgcctgatgaaattgacatc
acctcatacattgaacagacccggtga
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