Pyxicephalus adspersus (African bullfrog): 140344528
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Entry
140344528 CDS
T11284
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pads Pyxicephalus adspersus (African bullfrog)
Pathway
pads03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pads00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140344528 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pads03019
]
140344528 (SKIC2)
Enzymes [BR:
pads01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140344528 (SKIC2)
Messenger RNA biogenesis [BR:
pads03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140344528 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
140344528 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
DUF3516
nSTAND3
Motif
Other DBs
NCBI-GeneID:
140344528
NCBI-ProteinID:
XP_072287818
LinkDB
All DBs
Position
Z:complement(10589853..10640273)
Genome browser
AA seq
1247 aa
AA seq
DB search
MSKLDLPARDPLDLPLSILEVGIGGRLELITKPPASNGLSFPLSTNPNGLPPYDVDLSYE
VVQKYLGDPEWLSVHDFDRSQRSWPRTKDVSSLFHMDITAPQTDISMERNSATGELRGIS
EVSADHIGLSAQNSLSLRRPPGPPSQSVKGSTSNFPFWPGGMDEPTLEQMKAISEEDEAL
DFEKDLLSAPPGWKNGMNFKQTDGLGPPGVLSLVNLLGTLEDFTLADSSEDEDEAKIKHK
PKEDKKEEGLHRTNSLEDLGVETVSPAPAPLPPSSTESTKEQWAIPLDSRLPVDDFYKRI
PELAFKHPFELDPFQKKAIQCLEAGSSVFIAAHTSAGKTVVAEYAIALCLKHMTRAIYTS
PIKALSNQKFRDFKITFGDVGLITGDVQLYTGASCLIMTTEILRSMLYNGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKKKKIYVIST
TKRPVPLEHYLYTGNSQKTQNEFFVLQDALGAFQTKGYYAAVEAKKERTSKYAQSFGAKH
PHGGGAGHDKGTWLSLIQSLRRRDALPVVVFTFSRTRCEQNASALTTVDLCTASERSEVQ
TYYTKCLSRLRGTDRQLPQVLHMLDLLKRGIGIHHSGILPILKEVVEMLFSRGLVKILFA
TETFAMGVNMPARTVVFDSIRKHDGSNFRDLTPGEYIQMAGRAGRRGLDSTGMVIILCKG
DVPEMSDLHKMMLGKPTQLQSQFRLTYSMILNLLRVEALRVEDMMKRSFAESRTQKDSKA
HEQRIKVLTKTLGDMGEIECSGDLADLQDYFLTVQELIHTRDTLQKKVVESINGMKCLSV
GRVIIISTEYHPWVPGVILQVSSDASNRIYTTLVLCEKKRDGGVPPAEREKDGKRAPSPD
DLLIGKVFRPEGPGDFKLLKLHASDILMLTGKTLRVHADKVLDDVTRSQMPRFRNDPPGP
AVSGVTQELSRLADLPPGSLTSLCPVNDLQLKELEVVEAVSRIKRLEGALRGFNCPNSPR
FTSQYLRLEQRSQVLDELDRLRFLTSDQSLSLLPEYQQRINVLRTLQYIDDGGAVQLKGR
VACEVSSHELLVTELVLDGTLSPLNPEEIAALLSCLVFQHKTQCEPRLTDTLKEGVKKVK
ELAERIALIQRDCGLKEPVEDFVSQYKFGLTEVVYEWARGMPFAEIMALTDIQEGLIVRC
VQRLDEACRDVRSAARLVGDATLCAKMDSASQLIKRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaactagatctcccagctagggatccactggatctcccactttccatcctagaa
gttggcataggggggcgattagaactaatcacaaaacctccagcatccaatggtctttcc
tttccattatctacgaatcctaatggcttacctccgtacgatgtggatttgtcatacgaa
gtggtccagaaataccttggtgatcctgaatggctatctgtccatgattttgaccgtagc
cagaggtcctggcctcgtaccaaggatgttagctccttgttccacatggacatcactgcc
ccgcagactgatatcagcatggagcgtaattctgctaccggagagctgcgtgggatcagt
gaggtctctgcagatcacattggtctctcagcacagaattctttgtctctaagacgacct
ccaggccctccatctcagtctgtcaagggcagcacttctaactttcctttctggccaggt
ggaatggatgaacccactcttgaacagatgaaggctatcagtgaagaggatgaagccctg
gactttgagaaagatctcttatctgctccccctggatggaaaaacgggatgaatttcaag
caaacagatggattaggcccccctggggttctctccctggtcaacctacttggaactctg
gaagatttcacgttggcagactctagtgaggatgaagatgaagccaaaataaagcacaaa
cctaaggaagacaagaaggaagaaggacttcacaggaccaatagcctggaagacctgggt
gtggagacagtatcccctgctcccgcacccctccctccatcttcaacagaatctaccaag
gagcagtgggctattccactggacagtcgcctccctgtggatgatttctacaagcgcatt
ccggagctagcctttaagcatccatttgaactggatcccttccagaaaaaagccattcag
tgtctggaagctggttcttccgtctttatcgcagctcacacatctgccggaaagactgtg
gtggcagaatatgccatagcattgtgtttaaagcacatgaccagagccatctatacctcc
cccataaaggccttgtccaatcagaagtttcgagatttcaagattacttttggtgatgtc
ggcctgatcacgggagacgtccagctctatacaggagcatcgtgtcttattatgactaca
gagatcttacgatctatgctgtacaatggctctgacgtcattcgggacttagaatgggtt
atctttgatgaggtccattatatcaacgatgcagagcgtggagtagtatgggaagaagtt
ttaattatgttgccggatcatgtcaatatcatactgctgagtgctacagtgcccaacacc
ctggagtttgcagactggattgggagaataaagaagaagaagatttatgtgatcagtacc
accaagaggccggtgccgttagaacattatctgtacactgggaacagtcagaagacacag
aatgagtttttcgtgctgcaggatgctttaggagccttccagaccaaaggctactatgct
gctgtggaagcgaaaaaagagagaacatctaaatacgcacagtcctttggagcgaaacac
ccacatgggggtggagctgggcatgataagggtacatggctgtctctgatccagtctctc
cgccgacgggatgccctccctgtcgtggttttcaccttttcccgcacacggtgtgaacag
aatgcctccgctctgaccacagtagacttgtgtaccgcttcagagcgaagtgaagtccag
acgtactataccaagtgcctgagccgtctacgagggactgaccgccagctaccacaggta
ctgcacatgctggatttgctgaaaagagggattggaattcatcacagcggaatcctgccc
attctaaaagaagtggtggagatgttgttcagccgtggactagtcaagatcctatttgcc
acagagacttttgccatgggggttaacatgcctgctcgtacagtggtgttcgattcaatc
cgaaaacacgatggctccaacttcagagacctgactccaggagaatatatacagatggct
ggccgtgctgggcgtcgaggtttggacagtactggtatggtgataatattatgtaaagga
gacgtaccagagatgagtgatttgcacaagatgatgctgggcaagcccactcagttacag
tctcagtttcgactcacttattccatgatcctgaatctactccgtgttgaagcgttgaga
gtggaggacatgatgaagagaagttttgcagaatccagaacacagaaggacagcaaggct
catgaacagcggataaaagtcctcaccaaaacactgggggatatgggggaaattgaatgc
tcaggagacctggcagacctgcaggattattttttgaccgtacaagagctcatccatacc
agagataccttacagaaaaaggtagtggagtccatcaatggaatgaaatgcctgagtgtg
ggccgtgtcatcatcatcagcaccgaataccacccatgggtgccaggagtcatcctgcag
gtgtcctcagatgccagtaacaggatctacaccaccttggtactgtgtgagaagaagcga
gatggcggagtgcccccagcagaaagagagaaggatggcaagagagccccatcccctgat
gaccttttaataggcaaagtgttcagacctgaaggcccaggtgacttcaagcttcttaag
ctccatgcttcagacattcttatgttaaccgggaaaactctgagagttcatgctgataaa
gtgctggatgacgtcaccaggagccaaatgcctcgattcaggaatgaccctccaggtccc
gcagtatctggggtgactcaggagctgtctcggctcgcagacttacctccagggtcactg
acctctttgtgccccgtaaatgatctccagctgaaggagctggaggtggtggaggcagtc
agtcggatcaaaaggcttgaaggagcactacggggattcaattgtcctaacagcccccga
tttacctcccagtatctacgcctggaacagagatcgcaggtgttggatgagctggatcgt
ctgcgcttcctcacttctgaccaatcgctgagcctcttgccggagtaccagcagagaatt
aatgttctgcgcactcttcagtacattgatgatggtggcgcagtacagttaaagggccga
gtggcctgtgaggtcagcagtcatgaacttttagtgactgaactggttttggatggaacg
ctatctcctcttaaccctgaggagattgcagcgctgctttcatgcctggtgtttcagcac
aagacgcagtgtgagcctcggttaacagacactctgaaggagggagtaaagaaggtgaag
gagttggctgaacgtatagctttgattcagcgggattgtggccttaaagagccggtggag
gactttgtgtcgcagtacaagtttggcctgacagaggttgtgtatgaatgggcacgtggc
atgccatttgcagaaatcatggcacttactgacatccaggaaggcctcattgtgcgctgt
gtacagcggctagatgaagcgtgccgggacgttcgttctgctgctcgactggttggagat
gcaactctgtgtgccaagatggattccgcctcacagcttatcaagagggatatagtgttt
gctgctagcctgtacacacagtaa
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integrated database retrieval system
