Paenibacillus sp. FSL R7-0273: R70723_11140
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Entry
R70723_11140 CDS
T03356
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
paea
Paenibacillus sp. FSL R7-0273
Pathway
paea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R70723_11140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paea03019
]
R70723_11140
03009 Ribosome biogenesis [BR:
paea03009
]
R70723_11140
Enzymes [BR:
paea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R70723_11140
Messenger RNA biogenesis [BR:
paea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R70723_11140
Ribosome biogenesis [BR:
paea03009
]
Prokaryotic type
rRNA helicases
R70723_11140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
UvrD-helicase
AAA_30
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AIQ46369
UniProt:
A0A089LNX8
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All DBs
Position
2540028..2541473
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AA seq
481 aa
AA seq
DB search
MSELQFRDYDLNEEIIKALDVLGYSSPTEVQSKVIPVALGGQDLIVKSQTGSGKTASFGI
PVCELVDWAENKPQVLVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKLELA
QKTHVVVGTPGRVFDHIERGTLPLNKIRTLVIDEADEMLSMGFIEQIEKIIKQLPKERVT
MLFSATLPEAIKNLCRKYMTLPVDIEIEASGITTATIEHALIVVRQAAKFGLLLDLLTVE
NPDSCIIFCRTQEQVNDLFRGMADQELPADKLHGGMMQDERFEVMNAFKRGQFRYLIATD
VAARGIDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITLVTPNEHKWVKDIEGY
IGFELPQMKAPSEDAVAYARPAFEQKLGKQQVRKAGKTEVMNRNIMKLYFNGGKKKKLRA
VDFVGTIARLEGMTADDIGIITIQDNVTYVDILNGKGPMVLQAMKDTTIKGKLLKVHIAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagttacaattcagagattatgatttaaatgaagagattatcaaggcgctggac
gtactgggctattcgagcccgactgaggtgcagagcaaggtcattcctgtagccctcggc
ggccaggatctgattgtcaaatcccagaccggcagcggcaaaaccgcctcgttcggcatt
cccgtctgtgagctggtggactgggccgagaataagccccaggtgctggtactgacgccg
acacgtgagctcgccgcacaggtgaaagaggatattacgaatatcggccgtttcaaacgg
atcaaggcggtagctttgttcggcaagcagccctttgccccacagaagcttgagctggcc
caaaaaacacatgtcgtcgttggtacgccgggacgcgtgttcgaccatatcgagcgcggc
accctgccgctgaacaagatcagaacgctagtcattgacgaagcggatgagatgctcagc
atgggctttatcgagcagattgagaagattatcaagcaactgcctaaggagcgggttacg
atgctgttctcggccacgctgcctgaggcgatcaagaacctgtgccgcaaatatatgacg
ttgcctgtggatattgaaattgaagccagcgggattacgacggcgacgattgagcatgcg
ctgattgtggtcagacaggctgccaaattcgggctgctgctggacctgctgacggtggag
aatccggacagctgtattattttttgccggacgcaggagcaggtaaacgatctgttccgg
gggatggctgaccaggagcttcctgcggacaagctgcacggcgggatgatgcaggatgag
cggtttgaggtgatgaacgcgttcaagcggggccagttccgttatctaattgctacagat
gtagctgcccgcggcattgacatcgagaacattacccatgtgatcaactacgatatcccg
atggaaaaagagagctacgtgcaccgcaccggccggaccgcccgtgcaggcaaaagcggc
aaagcaattacgctcgttacccctaatgagcataaatgggtgaaggacatcgagggctac
atcgggtttgaactcccgcagatgaaggccccgtcggaggatgccgtggcctatgccagg
ccggcctttgaacagaagctgggcaaacagcaggtccgcaaggcaggcaaaacggaagtt
atgaaccggaacattatgaagctctatttcaacggcggcaagaaaaagaagctgcgtgcg
gtcgactttgtcggcacgattgccaggcttgagggaatgaccgccgatgatatcgggatc
atcactatccaggataatgtaacctatgtggatattctgaacggtaaaggcccaatggta
ctgcaggcaatgaaggatacaacaatcaagggcaagctgcttaaagtgcatattgcgaaa
aagtaa
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