Paenibacillus sp. FSL R7-0273: R70723_19310
Help
Entry
R70723_19310 CDS
T03356
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paea
Paenibacillus sp. FSL R7-0273
Pathway
paea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R70723_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paea03019
]
R70723_19310
Messenger RNA biogenesis [BR:
paea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R70723_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
AP_endonuc_2
Lactamase_B_6
PEP_mutase
Motif
Other DBs
NCBI-ProteinID:
AIQ47803
LinkDB
All DBs
Position
complement(4365748..4367430)
Genome browser
AA seq
560 aa
AA seq
DB search
MSKKNNNNEKLTIFALGGVGEIGKNMYVVQYANDIVVVDAGLKFPEEDMLGIDIVIPDIS
YLTENRDKVRGIVLTHGHEDHIGGLPYVLKNLNVPVYGTRLTLGLVENKLKEANLLGETK
RILINEDSVIDLGTSLQVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQYA
NLHRMAEIGQKGVLALMSDSTNAEKPGFTPSEKNVGIVLEDIFRKADQRVVVATFASNVH
RIQQVVNAAESTGRKITVIGRSMVNVVAIASELGYLHVPDGMLIEPEEMNRMAANRVVVL
CTGSQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVI
YSGSNSGVHVSGHGSQEELKLMLNLMKPKYFIPIHGEFRMQRRHALLAESVGVEPSNIFI
TEIGEVIEIQGGGARRAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSK
QNGAIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLQRLMSEKVNEWASLKTSVKDSLG
RFLYEQTRRRPMILPIIMEV
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaaaaataacaacaacgaaaagctaacgattttcgctttgggcggggtcggg
gaaatcggtaaaaacatgtatgtagtccaatatgctaacgacattgtggtcgtggatgca
ggactcaaattcccggaagaggatatgctcggtattgatattgttatcccagacatctca
tacctgacagagaaccgtgacaaggttagagggattgtcctcactcacggacatgaggat
cacatcggcggactgccgtatgtactcaagaacctgaatgttcccgtatacggaacaaga
cttacactcggcctggtcgagaacaagctgaaggaagccaatctgcttggcgaaacaaag
cgcattctgatcaatgaagattcggttattgacctgggaacttccctgcaggtaactttc
ttcagaactaaccacagtattccggactctgtaggcgtatgcattgagacaccggaaggt
aatgttgttcatacaggtgacttcaaatttgaccatacaccggttaacgggcaatatgcg
aacctgcaccggatggccgaaatcggccagaagggcgtgcttgcccttatgtcagacagc
accaatgctgagaagccgggctttacaccttctgagaagaatgtcggcatcgtgctggag
gatatcttccgcaaggctgaccagcgtgtagttgtggcgacctttgcctctaacgtgcac
cgcatccagcaggtggttaatgccgctgaatccaccggccgcaagattaccgtaatcgga
cgcagcatggttaacgtagttgccattgcttccgagcttggctatctgcatgtaccggac
ggtatgctgattgagcctgaggaaatgaaccgcatggctgctaaccgcgttgttgtgctc
tgcacaggcagccagggagagccgatgtcggcacttacccgcatggcccgctccagtcac
cgtaaggtggatatcctgccgggagataccgttatcattgcggcaactccggttccgggc
aacgagaaatatgttggccgtaccattgatgaactgttccgcctcggtgccaatgtaatc
tacagcggctcgaactccggcgttcacgtatccggccacggcagccaggaagagctcaag
ctaatgcttaacctgatgaagccgaaatacttcattccaatccacggtgaattccggatg
cagcgcagacatgcgcttctggcagaatccgtcggcgtggagccaagcaatatcttcatc
accgaaattggtgaagtcattgaaattcagggcggcggagcccgcagagccggtaaggtt
actgccggtaacgtgctgattgacggtctgggtgtcggcgatgtgggtaacatcgtactg
cgcgaccgcaagctgctgtcccaggacggtatcctggtagttgttgtaacgctgagcaag
cagaatggagcgattgtctccgggccggatatcatttcccgcggctttgtatatgtccgc
gagtccgaaggactgctggatgaagccaaccgcattgtatccagcacgctgcagcgcctg
atgagcgagaaggtcaacgaatgggcttccctcaagaccagcgtcaaagattcgctcgga
cgcttcctgtacgaacagacgcgccgcagaccgatgattttgccgatcattatggaagtg
taa
DBGET
integrated database retrieval system