Pseudomonas aeruginosa NCGM 1900: NCGM1900_0436
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Entry
NCGM1900_0436 CDS
T03789
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Pathway
paeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCGM1900_0436 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeb03019
]
NCGM1900_0436 (rhlE)
Enzymes [BR:
paeb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCGM1900_0436 (rhlE)
Messenger RNA biogenesis [BR:
paeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCGM1900_0436 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAP19570
UniProt:
A0A077JQ23
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All DBs
Position
complement(478818..480737)
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AA seq
639 aa
AA seq
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MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN
PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKAIEKMTRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQ
ASNPDSNVAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVDG
NRDPEEFLDDDFDNFGNRADYVSPYQGQENKGRGRRGGQQKPQGGTGQQGRGQGQGQARG
KSQGAAQGGARGQGAGQGKAKKPRASKPRGQGRENASRMSDAPLREPSEYGTGKQPSRQP
VVINKRDLVRMDRFPTAEQLDELEPRRKGERPALLTRNR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcttccctcggactctccgaggcgcttgcccgcgctgtggaggctgcgggc
tacagccagcccactcccgtgcaacagcgggcgattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggcaccggcaagaccggtggtttcgccctgccggtactg
gagcgcctgttccccgccggtcatcccgaccgcgaacaccgccacggcccgcgccaggcg
cgcgtgctggtactgaccccgacccgtgagctggccgcccaggtgcatgacagcttcaag
gtctacgcccgcgacctgccgctgaacagcacctgcatcttcggcggggttggcatgaac
ccgcagatccaggccctggccaagggcgtcgacgtactcgtcgcctgccccggccgcctg
ctcgacctggccgggcagaacaaggtcgacctgtcccacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggttctcgccaag
ctgccgcccaagcgccagaacctgctgttctcggctaccttctcgaaagacatcgtcgac
ctcgccaacaagctcctgcacaacccggaacgcatcgaggtaacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtgttccgcctgccggcgccgcagaagcgcgccctgctg
gcgcacctggtgaccgtcggcgcctgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgtctcgccgagtacctgaccaagcacggcctgccggccgccgcgatccat
ggcaacaagagccagaacgcgcggaccaaggcgctggccgacttcaaggccaacgacgtg
cgcatcctggtggcgaccgacatcgccgcccgcggcctggatatcgaccagttgccccat
gtggtcaactacgaactgcccaacgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgagccggacgcagcggcgaggcgatctcgctggtggcgccggacgaagagaagctg
ctcaaggccatcgagaagatgaccagacagcgtattcccgatggcgatgcccagggtttc
gaccccgaggccgtgctgcccgaggtggcccagccggagccccgcgaagcgccgcagaag
cagccgcgccgcgacaaggaacggcgcagcagccgcgagcgcaagccgaaagacgcccag
gcgagcaaccccgacagcaatgtcgctgcggcccaggacggtaccgagaagccggccggc
aagcgccgccgtcgcggtggcaagaacaaggaaaaccgcgaggccggccaagcgcagcag
ccgcggcagagccgcgaagcgcgtccggccaagcccaatcggccgccggaagtcgacggt
aatcgcgatccggaagagttcctcgacgacgacttcgacaatttcggcaaccgcgccgac
tacgtcagcccctaccagggccaggaaaacaagggacgcggacgccgcggtggccagcag
aaaccccagggcggtaccggccagcagggtcgtggccaaggccagggccaagctcgcggc
aagagccagggcgccgctcaaggcggcgctcgcggtcagggtgccggccagggcaaggcg
aagaaaccgcgcgccagcaagccgcgcggccagggtcgcgagaatgcctcgcggatgagc
gacgcgccgctgcgcgagccgtccgagtacggcaccggcaagcagccgagccgccagccg
gtggtgatcaacaagcgcgacctggtgcgcatggatcgcttccccaccgccgagcagctc
gacgagctggagccgcggcgcaagggcgagcgccccgcactgctgacccgcaaccgctaa
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