Pseudomonas aeruginosa NCGM 1900: NCGM1900_0590
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Entry
NCGM1900_0590 CDS
T03789
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Pathway
paeb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCGM1900_0590 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paeb03021
]
NCGM1900_0590 (rpoD)
Transcription machinery [BR:
paeb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCGM1900_0590 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Sos7
Motif
Other DBs
NCBI-ProteinID:
BAP19723
UniProt:
A0A072ZFS4
LinkDB
All DBs
Position
complement(629330..631183)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAEADTDEAAAEEAAAALAAVESDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLSGYIDPDDGSLPAEEV
EPVNLKDDSADSKEKDDEEEESDDSSDSDDEGDGGPDPEEARLRFTAVSEQLDKAKKALK
KHGRGSKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQLCVRDAR
MPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTVA
EIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMAT
SESLKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctgaaagagttgatcgcccgaggccgtgag
cagggatacctgacttacgcggaggtcaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgttgctggccgaggcggataccgacgaagccgcagcggaa
gaagccgcagcggccctggccgcggtggaaagcgacatcggtcgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgcgaagtgatgagcgccatcgcccagttcccg
ggcacggtggacagcatcctggccgactacaatcgcatcgtcgccgaaggcggtcgcctc
tccgacgtcctcagcggctatatcgatcccgatgacggcagcctgcccgccgaagaggtg
gagccggtcaacctgaaggacgattccgccgactcgaaagagaaggacgacgaggaagaa
gaaagcgacgacagcagcgacagcgacgacgaaggcgacggcggtccggatccggaagaa
gcccgcctgcgtttcaccgcggtctccgagcagctcgacaaggccaagaaggccctgaag
aagcacggtcgcggcagcaagcaggccaccgccgaactcaccggcctggccgagctgttc
atgccgatcaagctggtgcccaagcagttcgacgccctggtcgcccgcgtgcgctccgcc
ctggaaggcgtgcgcgcccaggaacgcgccatcatgcagctctgcgtgcgtgacgcgcgc
atgccgcgtgccgacttcctgcgcctgttcccgaaccacgagaccgacgagaagtgggtc
gacagcgtcctgaagagcaagccgaagtacgccgaggccatcgagcgcctgcgcgacgac
atcctgcgcaaccagcagaagctggcggccctggaaagcgaggtcgagctgaccgtcgcc
gagatcaaggaaatcaaccgcgcgatgtcgatcggcgaagccaaggctcgccgggcgaag
aaggaaatggtcgaggccaacctgcgcctggtgatttccatcgccaagaagtacaccaac
cgcggcctgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgtggctacaagttctccacctacgccacctggtggattcgc
caggcgatcacccgttcgatcgccgaccaggcacgcaccatccgcatcccggtgcacatg
atcgagacgatcaacaagctcaaccgcatctcccgccagatgctccaggaaatgggtcgc
gagcccaccccggaagagcttggcgagcgcatggacatgcctgaggacaagatccgcaag
gtactgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagat
tcgcacctgggcgatttcatcgaggactccaccatgcagtcgccgatcgagatggcgacc
agcgagagcctcaaggaatccacccgcgaagtcctcgccggcctcactgcccgggaagcc
aaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtgacccgcgagcggatccgccagatcgaagccaaggcgttgcgc
aagctgcgccatccgtcgcgaagcgagcacctgcgctccttcctcgacgagtga
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