Pseudomonas aeruginosa NCGM 1900: NCGM1900_1112
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Entry
NCGM1900_1112 CDS
T03789
Symbol
rhl
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Pathway
paeb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCGM1900_1112 (rhl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeb03019
]
NCGM1900_1112 (rhl)
Enzymes [BR:
paeb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCGM1900_1112 (rhl)
Messenger RNA biogenesis [BR:
paeb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCGM1900_1112 (rhl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAP20235
LinkDB
All DBs
Position
complement(1163246..1164817)
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AA seq
523 aa
AA seq
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MLYTGARSFLNHYEIAVLKALKKIFGKADGTQPQSGSSPVPQGPAGATAKGTAPTGEKPT
EKRPRKPRAPRADNESGAPRAVEKAEKGEKPAKPAAKEGRDAKPRSDKPRRERKPKPVDN
WKLEDFVVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQ
TGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLN
VMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM
GFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQ
HVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQH
KRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS
GTSISFAGEDDAFALPPIEELLGRKITCEMPPAELLKPVPRKH
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctttacactggcgcccgttcattccttaaccactacgagatcgccgtgctcaaagca
ctcaagaaaatcttcggcaaggccgacggaacccagccgcagagcggttcctccccggtc
ccgcaaggccctgccggcgctaccgcgaaaggtaccgcccccaccggcgaaaagccgacc
gagaaacgcccacgcaaaccgcgcgccccgcgcgccgacaacgagtccggcgccccgcgc
gccgttgaaaaggccgagaaaggcgaaaagcccgccaaacccgccgccaaagaaggccgg
gacgccaagccgcgcagcgacaagccgcgccgcgaacgcaagccgaagccggtggacaac
tggaagctggaagacttcgtggtcgaaccgcaggaaggcaagacccgcttccacgacttc
aacctcgccccgagcctgatgcacgccatccatgacctcggcttcccctactgcacgccg
atccaggcgcaggtactgggcttcaccctgcgcggccaggacgccatcggccgcgcccag
accggtaccggcaagaccgccgcgttcctcatctcgatcatcacccagttgctgcagacc
ccgccgccgaaagagcgctacatgggcgagccgcgcgcgctgatcatcgccccgacccgc
gaactggtggtacagatcgccaaggacgccgcggcgctgaccaagtacaccgggctgaac
gtgatgaccttcgtcggcggcatggacttcgacaagcaactcaagcagctggaagcgcgc
ttctgcgacatcctggtagccaccccaggccgtctcctggacttcaaccagcgcggcgag
gtgcacctggacatggtcgaggtgatggtcctcgacgaagccgaccgcatgctcgacatg
ggctttatcccgcaggtccggcagatcatccggcagaccccgcacaagggcgaacgccag
accctgctgttctcggcgaccttcaccgacgacgtgatgaacctcgccaagcagtggacc
gtcgatccggcgatcgtcgagatcgagccggagaacgtcgccagcgataccgtcgagcag
catgtctacgccgtggccggcagcgacaagtacaagctgctgtacaacctggtggcgcag
aacaactgggaacgggtgatggtcttcgccaaccgcaaggacgaagtccgccgcatcgag
gaacgcctgaccaaggacggcatcagcgccgcccagatgtccggcgacgtgccgcagcac
aagcgcatccgcaccctggaaggcttccgcgaaggcaagatccgcgtcctggtggcaacc
gacgtggccggccgcggcatccacatcgacggcatcagccatgtgatcaacttcaccctg
ccggaagacccggacgactacgtgcaccgtatcggtcgtaccggccgcgccggcgcctcg
ggtacctcgatcagcttcgctggcgaggacgatgccttcgccctgccgccgatcgaagaa
ctgctgggccgcaagatcacctgcgagatgccgccggccgaactgctcaagccggtaccg
cgcaagcactga
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