Pseudomonas aeruginosa NCGM 1900: NCGM1900_1217
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Entry
NCGM1900_1217 CDS
T03789
Symbol
yfhD
Name
(GenBank) hypothetical protein
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
paeb
Pseudomonas aeruginosa NCGM 1900
Brite
KEGG Orthology (KO) [BR:
paeb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
paeb01011
]
NCGM1900_1217 (yfhD)
Enzymes [BR:
paeb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
NCGM1900_1217 (yfhD)
Peptidoglycan biosynthesis and degradation proteins [BR:
paeb01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
NCGM1900_1217 (yfhD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
SBP_bac_3
DUF5694
NMT1
Motif
Other DBs
NCBI-ProteinID:
BAP20339
LinkDB
All DBs
Position
complement(1262700..1264058)
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AA seq
452 aa
AA seq
DB search
MQKEGVLRVITRNSPATYFQDRNGETGFEYELAKRFAERLGVELKIETADNLDDLYAQLS
REGGPALAAAGLTPGREDDASVRYSHTYLDVTPQIIYRNGQQRPTRPEDLVGKRIMVLKG
SSHAEQLAELKKQYPELKYEESDAVEVVDLLRMVDVGDIDLTLVDSNELAMNQVYFPNVR
VAFDFGEARGLAWALPGGDDDSLMNEVNAFLDQAKKEGLLQRLKDRYYGHVDVLGYVGAY
TFAQHLQQRLPRYESHFKQSGKQLDTDWRLLAAIGYQESLWQPGATSKTGVRGLMMLTNR
TAQAMGVSNRLDPKQSIQGGSKYFVQIRSELPESIKEPDRSWFALAAYNIGGAHLEDARK
MAEKEGLNPNKWLDVKKMLPRLAQKQWYAKTRYGYARGGETVHFVQNVRRYYDILTWVTQ
PQMEGSQIAESGLHLPGVNKTRPEEDSGDEKL
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaaggagggcgtactgcgcgtgatcacccgcaacagcccggccacctacttccag
gaccgcaacggcgaaaccggcttcgaatacgaactggccaagcgcttcgccgagcgtctc
ggcgtcgagctgaagatcgagaccgccgacaacctcgacgacctctatgcccagctttcc
cgcgagggcggcccggctctcgccgcggccggcctgaccccgggacgcgaagacgacgcc
agcgtgcgctactcgcacacctacctcgacgtcaccccgcagatcatctaccgcaacggc
cagcagcgcccgacccgcccggaagacctggtcggcaagcgcatcatggtgctcaagggc
agcagccacgcggagcagctcgccgagctgaagaagcagtatcccgaactgaagtacgaa
gaatccgatgctgtcgaagtggtcgacctgttgcgcatggtcgacgtcggcgacatcgac
ctgaccctggtcgactccaacgaactggcgatgaaccaggtgtacttccccaacgttcgc
gtcgccttcgacttcggcgaagcccgcgggctggcctgggccttgccgggcggcgacgac
gacagcctgatgaacgaggtcaacgcattcctcgaccaggccaagaaggaaggcctgctg
caacgcctgaaggaccgttactacgggcatgtcgacgtactcggctacgtcggcgcctac
accttcgcccagcacctgcagcaacgcctgccgcgctacgaaagccacttcaagcagagc
ggcaagcagctggataccgactggcgcctgctcgccgccatcggctaccaggaatcgctg
tggcagcccggcgctacctccaagaccggcgtgcgcggcctgatgatgctgaccaaccgc
accgcccaggcgatgggggtgtccaaccggctcgacccgaagcagagcatccagggcggc
agcaagtatttcgtgcagatccgcagcgaactgcccgagagcatcaaggaaccggaccgc
agctggttcgccctggccgcctacaacatcggcggcgcgcacctggaagacgcgcgcaag
atggccgagaaggaaggcctcaacccgaacaagtggctggacgtgaagaagatgctgccg
cgcctggcgcagaagcagtggtacgccaagacccgctacggctatgcgcgcggcggcgag
accgtgcacttcgtacagaacgtgcggcgctactacgacatcctcacctgggtgacccag
ccgcagatggaaggcagccagatcgccgagagcgggttgcacctgcccggcgtgaacaag
acgcgcccggaagaagacagcggcgacgagaaactctag
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